How to scan a sequence for TF binding sites?

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ohms
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How to scan a sequence for TF binding sites?

Post by ohms » Thu Mar 23, 2006 2:17 pm

Is there a free software program that will allow you to enter your sequence of interest and search for a consensus binding sequence that you also specify? I know there are resources on the net but I don't know which one would allow me to enter both the DNA sequence and the transcription factor binding sequence as well. Any advice would be greatly appreciated. Thanks much!

dharma
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Post by dharma » Mon May 22, 2006 10:44 am

i think you can try out with the 'softberry' software package which has a set of biotools in which u can find for urselves.

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