Alignment report

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DryIceFun
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Alignment report

Post by DryIceFun » Tue Oct 12, 2010 9:02 pm

Hey everyone, I have a question regarding an alignment report.
Does someone know a program/web-based tool that aligns amino acids and/or nucleotides AND creates a report that tells me something like "amino acid on position 123 F is converted to L"
Until now I do it manually...quite time consuming...

Thanks for all hints!

P.S.: Freeware would be best...but Shareware is OK also...

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JackBean
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Post by JackBean » Wed Oct 13, 2010 9:27 am

hi, no need to post twice ;)

anyway, I don't think there is anything like that...
http://www.biolib.cz/en/main/

Cis or trans? That's what matters.

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canalon
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Post by canalon » Wed Oct 13, 2010 1:58 pm

I just saw Geneious in action (OK the free version is limited but it will do quite a lot of things, including alignment).It does notgenerate a report, but the color coded alignments generated make the detection of mismatches quite fast.
Patrick

Science has proof without any certainty. Creationists have certainty without
any proof. (Ashley Montague)

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JackBean
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Post by JackBean » Wed Oct 13, 2010 3:47 pm

well, like every alinment tool can do that
http://www.biolib.cz/en/main/

Cis or trans? That's what matters.

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canalon
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Post by canalon » Wed Oct 13, 2010 8:17 pm

I guess so, just saying that it does not take that long to spot the inconsistent color (or the weird color in the consensus line).
But I do not know anything that would align then generates a report.
Patrick

Science has proof without any certainty. Creationists have certainty without
any proof. (Ashley Montague)

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JackBean
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Post by JackBean » Thu Oct 14, 2010 6:03 am

agree, I was thinking about writing that as well, but then I thougth, that's not what he asked for, so not to writte...
http://www.biolib.cz/en/main/

Cis or trans? That's what matters.

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