Prediction of ligand binding sites

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raghavagps
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Prediction of ligand binding sites

Post by raghavagps » Mon Dec 28, 2009 4:52 pm

Dear Colleages
We have recently published a paper on "prediction of ATP interacting residues" following is detail. We wants to know feed back of users on this webserver

Identification of ATP binding residues of a protein from its primary sequence. BMC Bioinformatics 2009, 10:434
See http://www.biomedcentral.com/1471-2105/10/434/abstract

Thanks

Raghava

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mith
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Post by mith » Mon Dec 28, 2009 8:59 pm

That's interesting but what can you do with that level of accuracy?
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raghavagps
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Re: Prediction of ligand binding sites

Post by raghavagps » Tue Dec 29, 2009 3:57 pm

Agree accuracy is less but atpint server allows to choose threshold value. It means if you want to predict atp interacting residue with high probability than you may choose high threshold value. In simple world SVM score of each residue is proportional to probability of correct prediction.

See server http://www.imtech.res.in/raghava/atpint/

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