Search found 35 matches

by bioinfo
Mon Dec 10, 2012 12:39 pm
Forum: Bioinformatics
Topic: Want to do NMR data analysis ....
Replies: 2
Views: 12662

Want to do NMR data analysis ....

I have NMR spectrum data .... i want to know about any good software to analyse my result and to find structural information of my sample.
by bioinfo
Mon Aug 01, 2011 8:32 am
Forum: Bioinformatics
Topic: Want to creat ramachandra plot..by any tool..
Replies: 6
Views: 7677

Any one knows about PROCHECK v.3.5.4 : Its new version of PROCHECK found at
http://www.ebi.ac.uk/thornton-srv/softw ... nload.html.
I want to use it but its quite difficult to install and use...
If anyone had use it then pls tell difference between old and new version...
by bioinfo
Wed Apr 27, 2011 3:11 pm
Forum: Bioinformatics
Topic: Want to creat ramachandra plot..by any tool..
Replies: 6
Views: 7677

Want to creat ramachandra plot..by any tool..

I have created Rama plot by PROCHECK.
But i want to know some other tools..
It may be offline or online...
by bioinfo
Wed Apr 20, 2011 12:56 pm
Forum: Bioinformatics
Topic: Want Colorful Ramachandran plot.....
Replies: 5
Views: 5926

thanks Jack... But i solved this.. I have done structure prediction and i wanted to analyse result... For which i used procheck...to get ramaplot....actually procheck bydefault gives ps file of black and white plot...so i though the problem of ps to pdf converer..but now i get colored one by just ch...
by bioinfo
Fri Apr 01, 2011 4:45 pm
Forum: Bioinformatics
Topic: Superpose result anlysis....
Replies: 5
Views: 5939

Re: Superpose result anlysis....

Thank u for RMSD defination...Jack... But I still don't know RMSD for HEAVY & All mean... Is it regarding atoms..??? I have given below results which i gained from server... If you know then pls tell me...Have you used Superpose..??? Local RMSD Alpha Carbons Back Bone Heavy All RMSD 1.359 1.373 ...
by bioinfo
Tue Mar 29, 2011 8:41 am
Forum: Bioinformatics
Topic: Superpose result anlysis....
Replies: 5
Views: 5939

Superpose result anlysis....

I have done protein structure superpositions for mine 8 sequences.... using superpose server : URL: wishart.biology.ualberta.ca/SuperPose/ But i dont understand Global & Local RMSD for Heavy and All...I dont know their mean?? I also want to interpret & analyse my result... I have to wright c...
by bioinfo
Fri Mar 25, 2011 3:38 am
Forum: Bioinformatics
Topic: Want Colorful Ramachandran plot.....
Replies: 5
Views: 5926

I just cant understand your answers...I have solved this problem...by the way it has very much to do with bioinformatics...
by bioinfo
Thu Mar 24, 2011 5:04 am
Forum: Bioinformatics
Topic: Want Colorful Ramachandran plot.....
Replies: 5
Views: 5926

Want Colorful Ramachandran plot.....

I have ps file of ramachadran plot....i want pdf file of it....i have done it from ps to pdf server but it gives black & white plot...Is there any other way...or server for ramachandran plot.?/
by bioinfo
Fri Mar 18, 2011 10:03 am
Forum: Off Topic Discussion
Topic: can i use e-stick in linux os...??pls help
Replies: 1
Views: 1868

can i use e-stick in linux os...??pls help

I am using dual operating system on my pc.Windows 7 & Linux (Version fedora 13).... In which for internet connection ...i want to use E-stick... But i dont know that it can use in linux or not??? If any than pls give me name of that e-stick... Preferably i want to use Relience e-stick....but i d...
by bioinfo
Tue Mar 08, 2011 10:37 am
Forum: Bioinformatics
Topic: i want to find active site of protein....
Replies: 1
Views: 4297

i want to find active site of protein....

I want to find active site of protein....for that which online or offline software is available & which should i use....
pls give software name...or any information u have....
waiting for favourable reply.
by bioinfo
Tue Feb 08, 2011 10:47 am
Forum: Bioinformatics
Topic: Is ARB useful for phylogenetic analysis?
Replies: 0
Views: 2280

Is ARB useful for phylogenetic analysis?

ARB: a software environment for sequence data.
I want to know about ARB.If anyone used it then pls reply me.I also want about its installation & importance.
by bioinfo
Wed Feb 02, 2011 11:02 am
Forum: Bioinformatics
Topic: Plz give some info regarding DDBJ???
Replies: 10
Views: 8649

I used
http://arsa.ddbj.nig.ac.jp/arsa/search/QuickSearch
You can see here that all sequences are of whole genome.
& i want only gene sequence.