Search found 2 matches

by vl80
Wed Oct 31, 2012 2:55 am
Forum: Bioinformatics
Topic: Consensus sequence in Bioedit via CLUSTALW
Replies: 1
Views: 6482

Consensus sequence in Bioedit via CLUSTALW

Hello, I am aligning about 100 sequences in order to identify some primer targets for a long range PCR. I used the CLUSTALW interfaced via Bioedit. In order to identify the primers, I need a consesnsus sequence with degerate codes allowed. I can not find any option to get such a consensus sequence i...
by vl80
Thu Oct 25, 2012 9:20 pm
Forum: Bioinformatics
Topic: Multiple alignment tools
Replies: 4
Views: 16875

Multiple alignment tools

I need to align about 500 sequences that range from 10000 to 30000 bp in length with an average lenght of about 20000. The only way I know to do it is to download FASTA, reformat in notepad or word then use CLUSTALW. However, this would be a very lenghtly procedure . Are there any online free (prefe...