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A report on the results of phylogenetic analyses of the endemic African …

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- Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences, with a new tribal classification of the subfamily

  1. Wilson DE, Reeder DM: Mammal Species of the World. A Taxonomic and Geographic Reference. [] 

    3rd edition. Baltimore , Johns Hopkins University Press; 2005, 1 and 2:2000.

  2. Buckle AP, Smith RH: Rodent pests and their control. Cambridge University Press.; 1994.

  3. Guenet JL: The mouse genome.

    Genome Res 2005, 15(12):1729-1740. 

  4. Smits BMG, Cuppen E: Rat genetics: the next episode.

    Trends Genet 2006, 22(4):232-240. 

  5. Michaux JR, Reyes A, Catzeflis F: Evolutionary history of the most speciose mammals : molecular phylogeny of muroid rodents.

    Mol Biol Evol 2001, 18(11):2017-2031. 

  6. Jansa SA, Weksler M: Phylogeny of muroid rodents: relationships within and among major lineages as determined by IRBP gene sequences.

    Mol Phylogenet Evol 2004, 31(1):256-276. 

  7. Steppan SJ, Adkins RM, Anderson J: Phylogeny and Divergence-date estimates of rapid radiation in muroid rodents based on multiple nuclear genes.

    Syst Biol 2004, 53(4):533 -5553. 

  8. Musser GG, Carleton MD: Superfamily Muroidea. In Mammal species of the world A taxonomic and geographic reference. Volume 2. 3rd edition. Edited by: Wilson DE, Reeder DM. Baltimore , Johns Hopkins University; 2005:894-1531.

  9. Misonne X: African and Indo-Australian Muridae. Evolutionary trends.

    Ann Mus Royal Afr Centr, Tervuuren 1969, 172:1-219. 

  10. Watts CHS, Baverstock PR: Evolution in the Murinae (Rodentia) Assessed by Microcomplement Fixation of Albumin.

    Austr J Zool 1995, 43(2):105-118.

  11. Chevret P, Denys C, Jaeger JJ, Michaux J, Catzeflis F: Molecular and paleontological aspect of the tempo and mode of evolution in Otomys (Otomyinae: Muridae: Mammalia).

    Biochem Syst Ecol 1993, 21(1):123-131. 

  12. Ducroz JF, Volobouev V, Granjon L: An assessement of systematics of Arvicanthine rodents using mitochondrial DNA sequences : Evolutionary and biogeographical implications.

    J Mamm Evol 2001, 8(3):173-206. 

  13. Lecompte E, Denys C, Granjon L: Confrontation of morphological and molecular data: The Praomys group (Rodentia, Murinae) as a case of adaptive convergences and morphological stasis.

    Mol Phylogenet Evol 2005, 37(3):899-919. 

  14. Jansa SA, Barker FK, Heaney LR: The pattern and timing of diversification of Philippine endemic rodents: evidence from mitochondrial and nuclear gene sequences.

    Syst Biol 2006, 55(1):73-88. 

  15. Ford F: A splitting headache: relationships and generic boundaries among Australian murids.

    Biol J Linn Soc 2006, 89(1):117-138.

  16. Rowe KC, Reno ML, Richmond DM, Adkins RM, Steppan SJ: Pliocene colonization and adaptive radiations in Australia and New Guinea (Sahul): Multilocus systematics of the old endemic rodents (Muroidea: Murinae).

    Mol Phylogenet Evol 2008, 47(1):84-101. 

  17. Michaux JR, Chevret P, Filippucci MG, Macholan M: Phylogeny of the genus Apodemus with a special emphasis to the subgenus Sylvaemus using the nuclear IRBP gene and two mitochondrial markers : cytochrome b and 12s rRNA.

    Mol Phylogenet Evol 2002, 23(2):123-136.

  18. Suzuki H, Shimada T, Terashima M, Tsuchiya K, Aplin K: Temporal, spatial, and ecological modes of evolution of Eurasian Mus based on mitochondrial and nuclear gene sequences.

    Mol Phylogenet Evol 2004, 33(3):626-646. 

  19. Catzeflis FM, Denys C: The African Nannomys (Muridae) an early offshoot from the Mus lineage- Evidence from scnDNA hybridization and compared morphology.

    Isr J Zool 1992, 38:219-231.

  20. Chevret P, Veyrunes F, Britton-Davidian J: Molecular phylogeny of the genus Mus (Rodentia: Murinae) based on mitochondrial and nuclear data.

    Biol J Linn Soc 2005, 84(3):417-427.

  21. Veyrunes F, Britton-Davidian J, Robinson TJ, Calvet E, Denys C, Chevret P: Molecular phylogeny of the African pygmy mice, subgenus Nannomys (Rodentia, Murinae, Mus): Implications for chromosomal evolution.

    Mol Phylogenet Evol 2005, 36(2):358-369. 

  22. Watts CHS, Baverstock PR: Evolution in some African Murinae (Rodentia) assessed by microcomplement fixation of albumin.

    J Afr Zool 1995, 109(5/6):423-433.

  23. Chevret P: Etude évolutive des Murinae (Rongeurs: Mammifères) africains par hybridations ADN/ADN. Comparaisons avec les approches morphologiques et paléontologiques. Volume PhD. Montpellier , Université Montpellier II; 1994. 

  24. Steppan SJ, Adkins RM, Spinks PQ, Hale C: Multigene phylogeny of the Old World mice, Murinae, reveals distinct geographic lineages and the declining utility of mitochondrial genes compared to nuclear genes.

    Mol Phylogenet Evol 2005, 37(2):370-388. 

  25. Lecompte , Granjon L, Peterhans JK, Denys C: Cytochrome b-based phylogeny of the Praomys group (Rodentia, Murinae): a new African radiation?

    C R Biol 2002, 325(7):827-840.

  26. Cox CB: Plate tectonics, Seaways and Climate in the Historical Biogeography of Mammals.

    Memórias do Instituto Oswaldo Cruz 2000, 95:509-516.

  27. Krijgsman W: The Mediterranean: Mare Nostrum of Earth sciences.

    Earth Planet Sc Lett 2002, 205(1-2):1-12. 

  28. Sen S: Rongeurs et Lagomorphes du gisement Pliocène de Pul-e Charki, bassin de Kabul, Afghanistan.

    Bull Mus Natl Hist Nat 1983, 5:33-74.

  29. Tong H, Jaeger JJ: Muroid rodents from the Middle Miocene Fort Ternan locality (Kenya) and their contribution to the phylogeny of muroids.

    Pal Abt A 1993, 229(1-3):51-73.

  30. Winkler AJ: The middle/upper Miocene dispersal of major rodent groups between Asia and Africa. In Rodent and Lagomorph Families of Asian Origins and Diversification. Volume 8. Edited by: Tomida Y, Li CK, Setoguchi T. Tokyo , National Science Museum Monograph; 1994:173-184.

  31. Verneau O, Catzeflis F, Furano AV: Determining and dating recent rodent speciation events by using L1 (LINE-1) retrotransposons.

    Proc Natl Acad Sci USA 1998, 95(19):11284-11289.

  32. Michaux J, Chevret P, Renaud S: Morphological diversity of Old World rats and mice (Rodentia, Muridae) mandible in relation with phylogeny and adaptation. [] 

    J Zool Syst Evol Research 2007, 45(3):263-279. 

  33. Musser GG, Heaney LR: Philippine rodents : definitions of Tarsomys and Limnomys plus a preliminary assessment of phylogenetic patterns among native Philippine murines (Murinae, Muridae). [] 

    Bull Am Mus Nat Hist New York , American Museum of Natural History; 1992, 211:1-138.

  34. Tullberg T: Uber das system der Nagetiere. Eine phylogenetische studie.

    Nova Acta Regiae Societatis Scientiarium Upsaliensis, Ser 3 1899, 18:1-514.

  35. Furano AV, Hayward BE, Chevret P, Catzeflis F, Usdin K: Amplification of the ancient murine Lx family of long interspersed repeated DNA occured during the murine radiation.

    J Mol Evol 1994, 38:18-27. 

  36. Martin Y, Gerlach G, Schlotterer C, Meyer A: Molecular phylogeny of European muroid rodents based on complete cytochrome b sequences.

    Mol Phylogenet Evol 2000, 16(1):37-47. 

  37. Suzuki H, Tsuchiya K, Takezaki N: A molecular phylogenetic framework for the Ryukyu endemic rodents Tokudaia osimensis and Diplothrix legata.

    Mol Phylogenet Evol 2000, 15(1):15-24. 

  38. Sato JJ, Suzuki H: Phylogenetic relationships and divergence times of the genus Tokudaia within Murinae (Muridae; Rodentia) inferred from the nucleotide sequences encoding the Cytb gene, RAG 1, and IRBP.

    Can J Zool 2004, 82(8):1343-1351. 

  39. Breed WG: Evolution of the spermatozoon in Australasian rodents.

    Austr J Zool 1997, 45(5):459-478.

  40. Breed WG, Aplin KP: Sperm morphology of murid rodents from New Guinea and the Solomon islands: Phylogenetic implications.

    Austr J Zool 1994, 43:17-30. 

  41. Alston E: On the classification of the order Glires.

    Proceedings of the Zoological Society of London 1876, 61-98.

  42. Winge H: Jordfunde og nulevende Gnavere (Rodentia) fra Lagoa Santa, Minas Geraes, Brasilien: Med usight over gnavernes indbyrdes slagtskab.

    E Museo Lundii 1887, 1(3):1-178.

  43. Baverstock PR, Watts CHS, Gelder M, Jahnke A: G-Banding Homologies of Some Australian Rodents.

    Genetica 1983, 60(2):105-117. 

  44. Lee AK, Baverstock PR, Watts CHS: Rodents—the late invaders. In Ecological Biogeography of Australia. Edited by: A. K. The Hague , Junk; 1981:521–554.

  45. Lundrigan BL, Jansa SA, Tucker PK: Phylogenetic Relationships in the Genus Mus, Based on Paternally, Maternally, and Biparentally Inherited Characters.

    Syst Biol 2002, 51(3):410–431. 

  46. Veyrunes F, Dobigny G, Yang FT, O'Brien PCM, Catalan J, Robinson TJ, Britton-Davidian J: Phylogenomics of the genus Mus (Rodentia; Muridae): extensive genome repatterning is not restricted to the house mouse.

    Proc R Soc B-Biol Sci 2006, 273(1604):2925-2934. 

  47. Osgood WH: New and imperfectly known small mammals from Africa.

    Field Museum of Natural History, Zoological Series 1936, 20:217-256.

  48. Lecompte E, Granjon L, Denys C: The phylogeny of the Praomys complex (Rodentia: Muridae) and its phylogenetic implications.

    J Zool Syst Evol Research 2002, 40:8-25. 

  49. Viegas-Péquignot E, Petit D, Benazzou T, Prod'homme M, Lombard M, Hoffschir F, Descailleaux J, Dutrillaux B: Evolution chromosomique chez les Rongeurs.

    Mammalia 1986, 50:164-202.

  50. Serizawa K, Suzuki H, Tsuchiya K: A phylogenetic view on species radiation in Apodemus inferred from variation of nuclear and mitochondrial genes.

    Biochem Genet 2000, 38(1-2):27-40. 

  51. Michaux J, Aguilar JP, Montuire S, Wolff A, Legendre S: Les Murinae (Rodentia, Mammalia) neogenes du Sud de la France: Evolution et paleoenvironnements.

    Geobios 1997, 30(Supplement 1):379-385. 

  52. Martin-Suarez E, Mein P: Revision of the genera Parapodemus, Apodemus, Rhagamys and Rhagapodemus (Rodentia, Mammalia).

    Geobios 1998, 31(1):87-97.

  53. Pocock TN: Pliocene mammalian microfauna from Langebaanweg: a new fossil genus linking the Otomyinae with the Murinae.

    South African J Sci 1976, 72:58-60.

  54. Sénégas F, Avery DM: New evidence for the murine origins of the Otomyinae (Mammalia, Rodentia) and the age of Bolt's Farm (South Africa).

    S Afr J Sc 1998, 94:503-507.

  55. Sénégas F: Interpretation of the dental pattern of the South African fossil Euryotomys (Rodentia, Murinae), and origin of otomyine dental morphology. In 8th International Symposium on African Small Mammals, July 1999. Edited by: Denys C, Granjon L, Poulet A. Paris ; 2001:151-160. [Editions IRD (Series Editor): Colloques et Séminaires]

  56. Taylor PJ, Denys C, Mukerjee M: Phylogeny of the African murid tribe Otomyini (Rodentia), based on morphological and allozyme evidence.

    Zool Scr 2004, 33(5):389-402.

  57. Suzuki S, Yonekawa H, Tsuchiya K, Tsutamune T, Fujikawa K, Uchida Y: Oceanian-type black rat (Rattus rattus) found in port Otaru of Hokkaido, Japan.

    Med Entomol Zool 2001, 52:1–7.

  58. Musser GG: The first occurence of Hadromys (Rodentia: Muridae) in early Pleistocen Siwalik strata in northern Pakistan and its bearing on biogeographic affinities between indian and northeastern african murine faunas. [] 

    Am Mus Novitates 1987, 2883:1-36.

  59. Van der Straeten E: Etude biométrique des genres Dephomys et Stochomys avec quelques notes taxonomiques (Mammalia, Muridae).

    Rev Zool Afr 1984, 98(4):771-798.

  60. Dieterlen F, Vanderstraeten E: 2 New Specimens of Lamottemys-Okuensis Petter, 1986 from Cameroon (Muridae, Rodentia).

    Mammalia 1988, 52(3):379-385.

  61. Petter F: Un rongeur nouveau du Mont Oku (Cameroun) Lamottemys okuensis, gen. nov., sp. nov.; (Rodentia, Muridae).

    Cimbebasia, ser A 1986, 8:97-105.

  62. López-Martínez N, Michaux J, Hutterer R: The Skull of Stephanomys and a Review of Malpaisomys Relationships (Rodentia: Muridae): Taxonomic Incongruence in Murids.

    J Mamm Evol 1998, 5(3):185-215.

  63. Chevret P, Granjon L, Duplantier JM, Denys C, Catzeflis FM: Molecular phylogeny of the Praomys complex (Rodentia: Muridae). [] Zool J Linn Soc, London 1994, 112:425-442.

  64. Chevret P, Jenkins P, Catzeflis F: Evolutionary systematics of the Indian mouse Mus famulus Bonhote, 1898: molecular (DNA/DNA hybridization and 12S rRNA sequences) and morphological evidences.

    Zool J Linn Soc 2003, 137:385-401. 

  65. Jacobs LL, Downs WR: The evolution of murine rodents in Asia. In Rodent and Lagomorph Families of Asian Origins and their diversification. Volume 8. Edited by: Tomida Y, Li CK, Setoguschi T. Tokyo , National Science Museum Monograph; 1994:149-156.

  66. Jacobs LL, Flynn LJ: Of mice . again: the Siwalik rodent record, murine distribution, and molecular clocks. In Interpreting the past: essays on human, primate and mammal evolution. Edited by: Lieberman D, Smith R, Kelley J. Leiden, The Netherlands , Brill Academic; 2005:63–80.

  67. Ameur RC, Jaeger JJ, Michaux J: Radiometric age of early Hipparion fauna in North-west Africa.

    Nature 1976, 261:38-39. 

  68. Ameur R: Découverte de nouveaux rongeurs dans la formation miocène de Bou Hanifia (Algérie occidentale).

    Geobios 1984, 17:167-175. 

  69. Conroy GC, Pickford M, Senut B, Van couvering J, Mein P: Otavipithecus namibiensis, first Miocene hominoid from southern Africa.

    Nature 1992, 356:144-148. 

  70. Senut B, Pickford M, Mein P, Conroy G, Van Couvering J: Discovery of 12 late Cainozoic fossiliferous sites in paleokarst of the Otavi Mountains, Namibia.

    C R Acad Sci Paris 1992, 314(II):727-733. 

  71. Geraads D: Rongeurs du Miocène supérieur de Chorora, Ethiopie: Murinae, Dendromurinae et conclusions.

    Palaeovertebrata 2001, 30:89-109. 

  72. Jacobs LL: The beginning of the age of Murids in Africa.

    Acta Zool Fenn 1985, 170:149-151.

  73. Denys C: Of mice and men. Evolution in East and South Africa during Plio-Pleistocene times. In African biogeography and climate change in human evolution. Oxford University Press; 1999:226-252.

  74. Winkler AJ: Late Miocene muroid Rodents from Lothagam, Kenya.

    J Vert Paleont 1999, 19(3):85. 

  75. Denys C: Rodentia and Lagomorpha. Fossil rodents (other than Pedetidae) from Laetoli. In Laetoli: a Pliocene site in Tanzania. Edited by: Leakey MD, Harris JM. London , Oxford Science Publications; 1987:118-170.

  76. Winkler AJ: Neogene paleobiogeography and East African paleoenvironments: contributions from the Tugen Hills rodents and lagomorphs.

    J Human Evol 2002, 42(1-2):237-256. 

  77. Winkler AJ: Rodents and lagomorphs from the Miocene and Pliocene of Lothagam, northern Kenya. In Lothagam: Dawn of Humanity in Eastern Africa. Edited by: Leakey MG, Harris JM. New York , Columbia University Press; 2003:169-198. 

  78. Aguilar JP, Michaux J: The beginning of the age of Murinae (Mammalia: Rodentia) in southern France.

    Acta zool cracov 1996, 39(1):35-45.

  79. Renaud S, Michaux J, Mein P, Aguilar JP, Auffray JC: Patterns of size and shape differentiation during the evolutionary radiation of the European Miocene Murine rodents (vol 32, pg 61, 1999).

    Lethaia 1999, 32(2):100-100.

  80. Jacobs LL, Flynn LJ, Downs WR, Barry JC: Quo vadis, Antemus? The Siwalik muroid record. In European Neogene Mammal Chronology. Edited by: Linday EH, Fahlbusch V, Mein P. New York , Plenum Press; 1990:573-587.

  81. Flynn LJ: Small mammal indicators of forest paleo-environment in the Siwalik deposits of the Potwar Plateau, Pakistan.

    In Distribution and migration of tertiary mammals in Eurasia A volume in honour of Hans de Bruijn Edited by: Reuner JWF, Wessels W. 2003, 183-196. 

  82. Wessels W, Fejfar O, Pelaez-Campomanes P, de Bruijn H: Miocene small mammals from Jebel Zelten, Libya.

    Coloquios de Paleontología, Volumen Extraordinario 2003, 1: 699–715.

  83. Storch G, Dahlmann T: The vertebrate locality Maramena (Macedonia, Greece) at the Turolian-Ruscinian Boundary (Neogene). 10. Murinae (Rodentia, Mammalia).

    Münchner Geowissenschaftliche Abhandlungen (A) 1995, 28:121–132.

  84. Tchernov E: The Afro-Arabian component in the levantine mammalian fauna- a short biogeographical review.

    Isr J Zool 1992, 38(3-4):155-192.

  85. Pickford M, Morales J: Biostratigraphy and palaeobiogeography of East Africa and the Iberian peninsula.

    Paleogeogr Paleoclimatol Paleoecol 1994, 112(3-4):297-322.

  86. Garces M, Cabrera L, Agusti J, Pares JM: Old World first appearance datum of ''Hipparion'' horses: Late Miocene large-mammal dispersal and global events.

    Geology 1997, 25(1):19-22. 

  87. Flynn LJ, Jacobs LL: Late Miocene small mammal faunal dynamics: The crossroads of the Arabian peninsula. In Fossil Vertebrates of Arabia. Edited by: Whybrow PJ, Hill A. New Haven and London , Yale University Press; 1999:412-419.

  88. Bernor RL, Brunet M, Ginsburg L, Mein P, Picford M, Rögl F, Sen S, Steininger F, Thomas H: A consideration of some major topics concerning old world miocene mammalian chronology, migrations and paleogeography.

    Geobios 1987, 20(4):431-439.

  89. Bernor RL, Tobien H, Woodburne MO: Patterns of Old World hipparionine evolutionary diversification and biogeographic extension. In European Neogene Mammal Chronology. Edited by: Lindsay EH, Fahlbusch V, Mein P. New York , Plenum Press; 1990:263–319.

  90. Jaeger JJ, Michaux J, Sabatier M: Premières données sur les rongeurs de la formation de Chorora (Ethiopia) d’age Miocène Supérieur. I: Thryonomyidés.

    Palaeovertebrata 1980, Mém. Jubil. R. Lavocat:365–374.

  91. Benammi M, Calvo M, Prevot M, Jaeger JJ: Magnetostratigraphy and paleontology of Ait Kandoula Basin (High Atlas, Morocco) and the African-European late Miocene terrestrial fauna exchanges.

    Earth Planet Sc Lett 1996, 145(1-4):15-29. 

  92. Mein P, Pickford M, Senut B: Late Micoene micromammals from the Harasib karst deposits, Namibia. Part 2b- Cricetomyidae, Dendromuridae and Muridae, with an addendum on the Myocricetodontinae.

    Communs Geol Surv Namibia 2004, 13:43-63.

  93. Manthi FK: The Pliocene micromammalian fauna from Kanapoi, northwestern Kenya, and its contribution to understanding the environment of Australopithecus anamensis. In Department of Archaeology. Volume PhD. Cape Town, South Africa , University of Cape Town; 2006:231.

  94. Manthi FK: Preliminary review of the rodent fauna from lemudon’go, southwestern Kenya and its implication to the Late Miocene palaeoenvironments.

    Kirtlandia, in press.

  95. Mein P, Pickford M: Late Miocene micromammals from the Lukeino Formation (6.1 to 5.8 Ma), Kenya.

    Bull mens Soc linn, Lyon 2006, 75:183–223.

  96. Thomas H: Les Bovidae (Artiodactyla: Mammalia) du Miocène du sous-continent indien, de la péninsule Arabique et de l'Afrique: Biostratigraphi, biogéographie et écologie.

    Paleogeogr Paleoclimatol Paleoecol 1984, 45:251-299.

  97. Tassy P: Nouveaux Elephantoidea (Mammalia) dans le Miocène du Kenya. Nouveaux Elephantoidea (Mammalia) dans le Miocène du Kenya , Editions du CNRS; 1986.

  98. Wynn JG, Alemseged Z, Bobe R, Geraads D, Reed D, Roman DC: Geological and palaeontological context of a Pliocene juvenile hominin at Dikika, Ethiopia.

    Nature 2006, 443(7109):332-336.

  99. Pickford M: What caused the first steps towards the evolution of walkie-talkie primates ? In Origine(s) de la bipédie chez les hominidés. Edited by: Coppens Y, Senut B. Paris , CNRS; 1991:275-293.

  100. Brandy LD, Sabatier M, Jaeger JJ: Implications phylogénétiques et biogéographiques des dernières découvertes de Muridae en Afganistan, au Pakistan et en Ethiopie.

    Geobios 1980, 13:639-643. 

  101. Agusti J, Garces M, Krijgsman W: Evidence for African-Iberian exchanges during the Messinian in the Spanish mammalian record.

    Paleogeogr Paleoclimatol Paleoecol 2006, 238(1-4):5-14.

  102. Sen S: Megapedetes aegaeus nov.sp. (Pedetidae) et à propos d’autres "rongeurs africains" dans le Miocène d’Anatolie.

    Geobios 1977, 10(6):983-986.

  103. Sabatier M: Les Rongeurs du site Pliocène à hominidés de Hadar (Ethiopie).

    Paleovertebrata 1982, 12:1-56.

  104. Winkler AJ: Systematics, paleobiogeography, and paleoenvironmental significance of rodents from the Ibole member, Manonga valley, Tanzania. In Neogene Paleontology of the Manonga Valley, Tanzania. Volume 14. Edited by: Harrison T. New York , Plenum Press; 1997:311-332.

  105. Qiu ZD, Li CK: Rodents from the Chinese Neogene: Biogeographic relationships with Europe and North America. [] Bull Am Mus Nat Hist 2003, 586-602.

  106. Haq BU, Hardenbold J, Vail PR: Chronology of fluctuating Sea Levels Since the Triassic.

    Science 1987, 235:1156-1166.

  107. Krijgsman W, Hilgen FJ, Raffi I, Sierro FJ, Wilson DS: Chronology, causes and progression of the Messinian salinity crisis.

    Nature 1999, 400(6745):652-655. 

  108. Geraads D: Mio-Pliocene rodents from Lissasfa (Casablanca, Maroc).

    Geobios 1998, 31(2):229-245.

  109. Geraads D: Biogeography of circum-Mediterranean Miocene-Pliocene rodents; a revision using factor analysis and parsimony analysis of endemicity.

    Paleogeogr Paleoclimatol Paleoecol 1998, 137(3-4):273-288.

  110. WoldeGabriel G, White TD, Suwa G, Renne P, de Heinzelin J, Hart WK, Heiken G: Ecological and temporal placement of early Pliocene hominids at Aramis, Ethiopia.

    Nature 1994, 371(6495):330-333. 

  111. Chaimanee Y: Plio-Pleistocene rodents of Thailand.

    Thai Studies in Biodiversity 1998, 3:1-303.

  112. Jacobs LL: Fossil rodents (Rhizomyidae and Muridae) from Neogene Siwalik deposits, Pakistan.

    Mus North Arizona Pr, Bull Ser 1978, 52:1-104.

  113. deMenocal PB: African climate change and faunal evolution during the Pliocene-Pleistocene.

    Earth Planet Sc Lett 2004, 220(1-2):3-24.

  114. Griffin DL: Aridity and humidity: two aspects of the late Miocene climate of North Africa and the Mediterranean.

    Palaeogeography Palaeoclimatology Palaeoecology 2002, 182(1-2):65-91. 

  115. Partridge TC, Wood BA, deMenocal PB: The influence of global climatic change and regional uplift on large-mammalian evolution in East and Southern Africa. In Paleoclimate and human evolution, with emphasis on human origins. Edited by: Vrba ES, Denton GH, Partridge TC, Burckle LH. New-Haven and London , Yale University Press; 1995:331-355.

  116. Galewski T, Tilak M, Sanchez S, Chevret P, Paradis E, Douzery E: The evolutionary radiation of Arvicolinae rodents (voles and lemmings): relative contribution of nuclear and mitochondrial DNA phylogenies.

    BMC Evol Biol 2006, 6(1):80. 

  117. Weksler M: Phylogeny of Neotropical oryzomyine rodents (Muridae: Sigmodontinae) based on the nuclear IRBP exon.

    Mol Phylogenet Evol 2003, 29(2):331-349.

  118. Ensembl Genome Browser [] 

  119. Winnepenninckx B, Backeljau T, Dewachter R: Extraction of High-Molecular-Weight DNA from Mollusks.

    Trends Genet 1993, 9(12):407-407.

  120. Montgelard C, Bentz S, Tirard C, Verneau O, Catzeflis FM: Molecular Systematics of Sciurognathi (Rodentia): The Mitochondrial Cytochrome b and 12S rRNA Genes Support the Anomaluroidea (Pedetidae and Anomaluridae).

    Mol Phylogenet Evol 2002, 22(2):220-233. 

  121. Poux C, Douzery EJP: Primate phylogeny, evolutionary rate variations, and divergence times: A contribution from the nuclear gene IRBP.

    Am J Phys Anthropol 2004, 124:1–16.

  122. Adkins RM, Gelke EL, Rowe D, Honeycutt RL: Molecular phylogeny and divergence time estimates for major rodent groups: evidence from multiple genes.

    Mol Biol Evol 2001, 18(5):777-791. 

  123. Philippe H: MUST : a computer package of management utilities for sequences and trees.

    Nuc Acids Res 1993, 21:5264-5272.

  124. Swofford DL: PAUP* . Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4b edition. Sunderland, Massachusetts. , Sinauer Associates; 2001.

  125. Ronquist F, Huelsenbeck JP: MrBayes 3: Bayesian phylogenetic inference under mixed models.

    Bioinformatics 2003, 19(12):1572-1574.

  126. Posada D, Crandall KA: MODELTEST: testing the model of DNA substitution.

    Bioinformatics 1998, 14:817-818. 

  127. Guindon S, Gascuel O: A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood.

    Syst Biol 2003, 52(5):696 -6704. 

  128. Felsenstein J: Evolutionary trees from DNA sequences: a maximum likelihood approach.

    J Mol Evol 1981, 17(6):368-376. 

  129. Thorne JL, Kishino H: Divergence time and evolutionary rate estimation with multilocus data.

    Syst Biol 2002, 51(5):689-702. 

  130. Yang Z: PAML: a program package for phylogenetic analysis by maximum likelihood.

    Comput Appl Biosci 1997, 13(5):555-556. 

  131. Yoder AD, Yang Z: Divergence dates for Malagasy lemurs estimated from multiple gene loci: geological and evolutionary context.

    Mol Ecol 2004, 13(4):757-773.

  132. Jacobs LL, Pilbeam D: Of mice and men: Fossil-based divergence dates and molecular "Clocks".

    J Human Evol 1980, 9:551-555. 

  133. Jaeger JJ, Tong H, Denys C: Age de la divergence Mus-Rattus: comparaison des données paléontologiques et moléculaires.

    C R Acad Sci Paris, SerII 1986, 302:917-922.

  134. Barry JC, Morgan MLE, Flynn LJ, Pilbeam D, Behrensmeyer AK, Raza SM, Khan IA, Badgley C, Hicks J, Kelley J: Faunal and environmental change in the late Miocene Siwaliks of northern Pakistan.

    Paleobiology 2002, 28(2):1-71.

  135. Hand S: Australia's oldest rodents master mariners from Malaysia. In Vertebrate Zoogeography and Evolution in Australasia (Animals in space and time). Edited by: Archer M, Clayton G. Hesperian Press; 1984:913-919.

  136. Patnaik R: Reconstruction of Upper Siwalik palaeoecology and palaeoclimatology using microfossil palaeocommunities.

    Paleogeogr Paleoclimatol Paleoecol 2003, 197(1-2):133-150. 

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