table of contents table of contents

This study has shown that phosphorylation in mycoplasmas is comparable to that …

Home » Biology Articles » Microbiology » Microbial Physiology » Mapping phosphoproteins in Mycoplasma genitalium and Mycoplasma pneumoniae » References

- Mapping phosphoproteins in Mycoplasma genitalium and Mycoplasma pneumoniae

1.   Waites KB, Talkington DF: Mycoplasma pneumoniae and Its Role as a Human Pathogen.Clin Microbiol Rev 2004, 17:697-728.       2.   Fraser CM, Gocayne JD, White O, Adams MD, Clayton RA, Fleischmann RD, Bult CJ, Kerlavage AR, Sutton G, Kelley JM, Fritchman RD, Weidman JF, Small KV, Sandusky M, Fuhrmann J, Nguyen D, Utterback TR, Saudek DM, Phillips CA, Merrick JM, Tomb JF, Dougherty BA, Bott KF, Hu PC, Lucier TS, Peterson SN, Smith HO, Hutchison CA, Venter JC: The minimal gene complement of Mycoplasma genitalium.Science 1995, 270:397-403.       3.   Himmelreich R, Plagens H, Hilbert H, Reiner B, Herrmann R: Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitalium.Nucleic Acids Res 1997, 25:701-712.       4.   Hutchison CA, Peterson SN, Gill SR, Cline RT, White O, Fraser CM, Smith HO, Venter JC: Global transposon mutagenesis and a minimal mycoplasma genome.Science 1999, 286:2165-2169.       5.   Dirksen LB, Krebes KA, Krause DC: Phosphorylation of cytadherence-accessory proteins in Mycoplasma pneumoniae .J Bacteriol 1994, 176:7499-7505.       6.   Regula JT, Ueberle B, Boguth G, Görg A, Schnölzer M, Herrmann R, Frank R: Towards a two-dimensional proteome map of Mycoplasma pneumoniae .Electrophoresis 2000, 21:3765-3780.       7.   Halbedel S, Busse J, Schmidl SR, Stulke J: Regulatory protein phosphorylation in Mycoplasma pneumoniae . A PP2C-type phosphatase serves to dephosphorylate HPr(Ser-P).J Biol Chem 2006, 281:26253-26259.       8.   Cozzone AJ: Post-translational modification of proteins by reversible phosphorylation in prokaryotes.Biochimie 1998, 80(1):43-48.       9.   Razin S, Yogev D, Naot Y: Molecular biology and pathogenicity of mycoplasmas.Microbiol Mol Biol Rev 1998, 62:1094-1156.       10.   Krebes KA, Dirksen LB, Krause DC: Phosphorylation of Mycoplasma pneumoniae cytadherence-accessory proteins in cell extracts.J Bacteriol 1995, 177:4571-4574.       11.   Steinberg TH, Agnew BJ, Gee KR, Leung W-Y, Goodman T, Schulenberg B, Hendrickson J, Beechem JM, Haugland RP, Patton WF: Global quantitative phosphoprotein analysis using multiplexed proteomics technology.Proteomics 2003, 3:1128-1144.       12.   Bendt AK, Burkovski A, Schaffer S, Bott M, Farwick M, Hermann T: Towards a phosphoproteome map of Corynebacterium glutamicum .Proteomics 2003, 3:1637-1646.       13.   Schulenberg B, Aggeler R, Beechem J, Capaldi R, Patton W: Analysis of steady-state protein phosphorylation in mitochondria using a novel fluorescent phosphosensor dye.J Biol Chem 2003, 278:27251-27255.       14.   Proteome 2D-PAGE Database[]       15.   Perkins DN, Pappin DJ, Creasy DM, Cottrell JS: Probability-based protein identification by searching sequence databases using mass spectrometry data.Electrophoresis 1999, 20:3551-3567.       16.   Dandekar T, Huynen M, Regula JT, Ueberle B, Zimmermann CU, Andrade MA, Doerks T, Sánchez-Pulido L, Snel B, Suyama M, Yuan YP, Herrmann R, Bork P: Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.Nucleic Acids Res 2000, 28:3278-3288.       17.   Cortay JC, Rieul C, Duclos B, Cozzone AJ: Characterization of the phosphoproteins of Escherichia coli cells by electrophoretic analysis.Eur J Biochem 1986, 159:227-237.       18.   Regula JT, Boguth G, Görg A, Hegermann J, Mayer F, Frank R, Herrmann R: Defining the mycoplasma 'cytoskeleton': the protein composition of the Triton X-100 insoluble fraction of the bacterium Mycoplasma pneumoniae determined by 2-D gel electrophoresis and mass spectrometry.Microbiology 2001, 147(Pt 4):1045-1057.       19.   Ficarro SB, McCleland ML, Stukenberg PT, Burke DJ, Ross MM, Shabanowitz J, Hunt DF, White FM: Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae .Nat Biotechnol 2002, 20:301-305.       20.   Kaufmann H, Bailey J, Fussenegger M: Use of antibodies for detection of phosphorylated proteins separated by two-dimensional gel electrophoresis.Proteomics 2001, 1:194-199.       21.   Solow B, Bischoff KM, Zylka MJ, Kennelly PJ: Archael phosphoproteins. Identification of a hexosephosphate mutase and the alpha-subunit of succinyl-CoA synthetase in the extreme acidothermophile Sulfolobus solfataricus .Protein Sci 1998, 7:105-111.       22.   Hu VW, Heikka DS, Dieffenbach PB, Ha L: Metabolic radiolabeling: experimental tool or Trojan horse? (35)S-Methionine induces DNA fragmentation and p53-dependent ROS production.Faseb J 2001, 15:1562-1568.         23.   Hu VW, Heikka DS: Radiolabeling revisited: metabolic labeling with (35)S-methionine inhibits cell cycle progression, proliferation, and survival.Faseb J 2000, 14:448-454.       24.   Tatusov RL, Koonin EV, Lipman DJ: A genomic perspective on protein families.Science 1997, 278:631-637.       25.   Clusters of Orthologous Groups of proteins (COGs)[]       26.   Dannelly HK, Duclos B, Cozzone AJ, Reeves HC: Phosphorylation of Escherichia coli enolase.Biochimie 1989, 71:1095-1100.       27.   Freestone P, Grant S, Toth I, Norris V: Identification of phosphoproteins in Escherichia coli .Mol Microbiol 1995, 15:573-580.       28.   Robertson ES, Nicholson AW: Phosphorylation of Escherichia coli translation initiation factors by the bacteriophage T7 protein kinase.Biochemistry 1992, 31:4822-4827.       29.   Blom N, Kreegipuu A, Brunak S: PhosphoBase: a database of phosphorylation sites.Nucleic Acids Res 1998, 26:382-386.       30.   NetPhos[]       31.   Seeger M, Osorio G, Jerez CA: Phosphorylation of GroEL, DnaK and other proteins from Thiobacillus ferrooxidans grown under different conditions.FEMS Microbiol Lett 1996, 138:129-134.       32.   Wasinger VC, Pollack JD, Humphery-Smith I: The proteome of Mycoplasma genitalium . Chaps-soluble component.Eur J Biochem 2000, 267:1571-1582.       33.   Balish M, Karuse DC: Cytadherence and the cytoskeleton.In Molecular biology and pathogenicity of mycoplasmas. Edited by: Razin S, Herrmann R. New York, NY: Kluver Academic/Plenum Publishers; 2002:491-518.       34.   Miyata M: Cell division.In Molecular biology and pathogenicity of mycoplasmas. Edited by: Razin S, Herrmann R. New York, NY: Kluver Academic/Plenum Publishers; 2002:117-130.       35.   Dhandayuthapani S, Rasmussen W, Baseman J: Stability of cytadherence-related proteins P140/P110 in Mycoplasma genitalium requires MG218 and unidentified factors.Arch Med Res 2002, 33:1-5.       36.   Krause DC: Mycoplasma pneumoniae cytadherence: unravelling the tie that binds.Mol Microbiol 1996, 20:247-253.       37.   Krause D, Balish M: Structure, function, and assembly of the terminal organelle of Mycoplasma pneumoniae .FEMS Microbiol Lett 2001, 198:1-7.       38.   Seto S, Miyata M: Attachment organelle formation represented by localization of cytadherence proteins and formation of the electron-dense core in wild-type and mutant strains of Mycoplasma pneumoniae .J Bacteriol 2003, 185:1082-1091.       39.   Kenri T, Seto S, Horino A, Sasaki Y, Sasaki T, Miyata M: Use of Fluorescent-Protein Tagging To Determine the Subcellular Localization of Mycoplasma pneumoniae Proteins Encoded by the Cytadherence Regulatory Locus.J Bacteriol 2004, 186:6944-6955.       40.   Krause DC: Mycoplasma pneumoniae cytadherence: organization and assembly of the attachment organelle.Trends Microbiol 1998, 6:15-18.       41.   Layh-Schmitt G, Podtelejnikov A, Mann M: Proteins complexed to the P1 adhesin of Mycoplasma pneumoniae .Microbiology 2000, 146:741-747.       42.   Hansen EJ, Wilson RM, Baseman JB: Two-dimensional gel electrophoretic comparison of proteins from virulent and avirulent strains of Mycoplasma pneumoniae .Infect Immun 1979, 24:468-475.       43.   Starger JM, Goldman RD: Isolation and preliminary characterization of 10-nm filaments from baby hamster kidney (BHK-21) cells.Proc Natl Acad Sci USA 1977, 74:2422-2426.       44.   Dallo SF, Kannan TR, Blaylock MW, Baseman JB: Elongation factor Tu and E1 beta subunit of pyruvate dehydrogenase complex act as fibronectin binding proteins in Mycoplasma pneumoniae .Mol Microbiol 2002, 46:1041-1051.       45.   Beck BD, Arscott PG, Jacobson A: Novel properties of bacterial elongation factor Tu.Proc Natl Acad Sci USA 1978, 75:1250-1254.       46.   Lippmann C, Lindschau C, Vijgenboom E, Schroder W, Bosch L, Erdmann V: Prokaryotic elongation factor Tu is phosphorylated in vivo .J Biol Chem 1993, 268:601-607.       47.   Krause DC, Proft T, Hedreyda CT, Hilbert H, Plagens H, Herrmann R: Transposon mutagenesis reinforces the correlation between Mycoplasma pneumoniae cytoskeletal protein HMW2 and cytadherence.J Bacteriol 1997, 179:2668-2677.       48.   MyHit[]       49.   Harrison B, Mobley P: Phosphorylation of glial fibrillary acidic protein and vimentin by cytoskeletal-associated intermediate filament protein kinase activity in astrocytes.J Neurochem 1992, 58(1):320-327.       50.   Gobel U, Speth V, Bredt W: Filamentous structures in adherent Mycoplasma pneumoniae cells treated with nonionic detergents.J Cell Biol 1981, 91:537-543.       51.   Tully JG: Culture medium formulation for primary isolation and maintenance of mollicutes.In Molecular and diagnostic procedures in mycoplasmology. Volume 1. Edited by: Tully R. San Diego, CA: Academic Press; 1995:33-39.       52.   Bradford MM: A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.Anal Biochem 1976, 72:248-254.       53.   O'Farrell PZ, Goodman HM, O'Farrell PH: High resolution two-dimensional electrophoresis of basic as well as acidic proteins.Cell 1977, 12:1133-1141.       54.   Görg A, Obermaier C, Boguth G, Harder A, Scheibe B, Wildgruber R, Weiss W: The current state of two-dimensional electrophoresis with immobilized pH gradients.Electrophoresis 2000, 21:1037-1053.       55.   Görg A, Postel W, Domscheit A, Günther S: Two-dimensional electrophoresis with immobilized pH gradients of leaf proteins from barley (Hordeum vulgare): method, reproducibility and genetic aspects.Electrophoresis 1988, 9(11):681-92.       56.   ImageMaster 2D[]       57.   Parker C, Warren M, Loiselle D, Dicheva N, Scarlett C, Borchers C: Identification of components of protein complexes.In Methods in Molecular Biology. Edited by: Totowa, NJ: Humana Press. Patterson W; 2005:117-151.       58.   Mascot[]       59.   FindMod[]      

rating: 2.50 from 2 votes | updated on: 28 Aug 2007 | views: 9268 |

Rate article: