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- From Crop Domestication to Super-domestication

Adams KL, Cronn R, Percifield R, Wendel JF. Genes duplicated by polyploidy show unequal contribution to the transcriptome and organ-specific reciprocal silencing. (2003) 100. Proceedings of the National Academy of Sciences USA. 4649–4654.

Adams KL, Percifield R, Wendel JF. Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid. Genetics (2004) 168:2217–2226.

Ashikari M, Sakakibara H, Lin S, Yamamoto T, Takashi T, Nishimura A, et al. Cytokinin oxidase regulates rice grain production. Science (2005) 309:741–745.

Azhaguvel P, Komatsuda T. A phylogenetic analysis based on nucleotide sequence of a marker linked to the brittle rachis locus indicates a diphyletic origin of barley. Annals of Botany (2007) 100:1009–1015.

Bai Y, Lindhout P. Domestication and breeding of tomatoes: what have we gained and what can we gain in the future? Annals of Botany (2007) 100:1085–1094.

Bomblies K, Doebley JF. Pleiotropic effects of the duplicate maize FLORICAULA/LEAFY genes zfl1 and zfl2 on traits under selection during maize domestication. Genetics (2006) 172:519–531.

Bringhurst RS, Voth V. Breeding octoploid strawberries. Iowa State Journal of Research (1984) 58:371–381.

Bunce JA. Response of respiration of soybean leaves grown at ambient and elevated carbon dioxide concentrations to day-to-day variation in light and temperature under field conditions. Annals of Botany (2005) 95:1059–1066.

Cao Q, Lu B-R, Xia H, Rong J, Sala F, Spada A, Grassi F. Genetic diversity and origin of weedy rice (Oryza sativa f. spontanea) populations found in north-eastern China revealed by simple sequence repeat (SSR) markers. Annals of Botany (2006) 98:1241–1252

Casas A, Otero-Arnaiz A, Pérez-Negrón E, Valiente-Banuet A. In situ management and domestication of plants in Mesoamerica. Annals of Botany (2007) 100:1101–1115.

Chantret N, Salse J, Sabot F, Rahman S, Bellec A, Laubin B, Dubois I, Dossat C, et al. Molecular basis of evolutionary events that shaped the Hardness locus in diploid and polyploid wheat species (Triticum and Aegilops). The Plant Cell (2005) 17:1033–1045.

Cheng S-H, Zhuang J-Y, Fan Y-Y, Du J-H, Cao L-Y. Progress in research and development in hybrid rice: a super-domesticate in China. Annals of Botany (2007) 100:959–966.

Clark RM, Linton E, Messing J, Doebley JF. Pattern of diversity in the genomic region near the maize domestication gene tb1. (2004) 101. Proceedings of the National Academy of Sciences USA. 700–707.

Clark RM, Wagler TN, Quijada P, Doebley J. A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture. Nature Genetics (2006) 38:594–597.

Consonni G, Gavazzi G, Dolfini S. Genetic analysis as a tool to investigate the molecular mechanisms underlying seed development in maize. Annals of Botany (2005) 96:353–362.

Crawley MJ, Brown SL. Seed limitation and the dynamics of feral oilseed rape on the M25 motorway. (1995) 259. Proceedings of the Royal Society of London Series B. 49–54.

Darwin C. The origin of species by natural selection or the preservation of favoured races in the struggle for life (1859) 1st edn. London: John Murray.

Dillon SL, Shapter FM, Henry RJ, Cordeiro G, Izquierdo L, Lee SL. Domestication to crop improvement: genetic resources for Sorghum and Saccharum (Andropogoneae). Annals of Botany (2007) 100:975–989.

Doebley J, Lukens L. Transcriptional regulators and the evolution of plant form. The Plant Cell (1998) 10:1075–1082.

Doebley J, Gaut BS, Smith BD. The molecular genetics of crop domestication. Cell (2006) 127:1309–1321.

Doust A. Architectural evolution and its implications for domestication in grasses. Annals of Botany (2007) 100:941–950.

Dubcovsky J, Dvorak J. Genome plasticity: a key factor in the success of polyploid wheat under domestication. Science (2007) 316:1862–1866.

Emrich SJ, Li L, Wen T-J, Yandeau-Nelson MD, Fu Y, Guo L, et al. Nearly identical paralogs: implications for maize (Zea mays L.) genome evolution. Genetics (2007) 175:429–439.

Fukunaga K, Ichitani K, Kawase M. Phylogenetic analysis of the rDNA intergenic spacer subrepeats and its implications for the domestication history of foxtail millets. Setaria italica. Theoretical and Applied Genetics (2006) 113:261–269.

Fuller DQ. Contrasting patterns in crop domestication and domestication rates: recent archaeobotanical insights from the Old World. Annals of Botany (2007) 100:903–924.

Goldringer I, Prouin C, Rousset M, Galic N, Bonnin I. Rapid differentiation of experimental populations of wheat for heading time in response to local climatic conditions. Annals of Botany (2006) 98:805–817.

Guo Y, Ma Y, Zhan Z, Li B, Dingkuhn M, Luquet D, De Reffye P. Parameter optimization and field validation of the functional–structural model GREENLAB for maize. Annals of Botany (2006) 97:217–230.

Hajjar R, Hodgkin T. The use of wild relatives in crop improvement: a survey of developments over the last 20 years. Euphytica (2007) 156:1–13.

Hammer K. Das Domestikationssyndrom. Kulturpflanze (1984) 32:11–34.

Hancock JF. Contributions of domesticated plant studies to our understanding of plant evolution. Annals of Botany (2005) 96:953–963

Heslop-Harrison JS. Exploiting novel germplasm. Australian Journal of Agricultural Research (2002) 53:1–7.

Heslop-Harrison JS, Schwarzacher T. Domestication, genomics and the future for banana. Annals of Botany (2007) 100:1073–1084.

Hidema J, Kumagai T. Sensitivity of rice to ultraviolet-B radiation. Annals of Botany (2006) 97:933–942.

Hubbard L, McSteen P, Doebley J, Hake S. Expression patterns and mutant phenotype of teosinte branched1 correlate with growth suppression in maize and teosinte. Genetics (2002) 162:1927–1935.

Isemura T, Kaga A, Konishi S, Ando T, Tomooka N, Han OK, Vaughan DA. Genome dissection of traits related to domestication in azuki bean (Vigna angularis) and comparison with other warm-season legumes. Annals of Botany (2007) 100:1053–1071.

King D, Dalton H, Heslop-Harrison JS. GM Science Review. Second Report. An open review of the science relevant to GM crops and food based on interests and concerns of the public. (2004) Accessed June 2007. London: HMSO.

Komatsuda T, Pourkheirandish M, He C, Azhaguvel P, Kanamori H, Perovic D, et al. Six-rowed barley originated from a mutation in a homeodomain-leucine zipper 1-class homeobox gene. (2007) 104. Proceedings of the National Academy of Sciences USA. 1424–1429.

Konishi S, Izawa T, Lin S-Y, Ebana K, Fukuta Y, Sasaki T, Yano M. An SNP caused loss of seed shattering during rice domestication. Science (2006) 312:1392–1396.

Li C, Zhou A, Sang T. Rice domestication by reduced shattering. Science (2006) 311:1936–1939.

Lin Z, Griffith ME, Li X, Zhu Z, Tan L, Fu Y, Zhang W, Wang X, Xie D, Sun C. Origin of seed shattering in rice (Oryza sativa L.). Planta (2007) 226:11–20.

Liu A, Burke JM. Patterns of nucleotide diversity in wild and cultivated sunflowers. Genetics (2006) 173:321–330.

Liu B, Fujita T, Yan Z-H, Sakamoto S, Xu D, Abe J. QTL mapping of domestication related traits in soybean (Glycine max). Annals of Botany (2007) 100:1027–1038.

Mitchell PL, Sheehy JE. Supercharging rice photosynthesis to increase yield. New Phytologist (2006) 171:688–693.

Moore RC, Purugganan MD. The evolutionary dynamics of plant duplicate genes. Current Opinion in Plant Biology (2005) 8:122–128.

Morrell PL, Clegg MT. Genetic evidence for a second domestication of barley (Hordeum vulgare) east of the Fertile Crescent. (2007) 104. Proceedings of the National Academy of Sciences USA. 3289–3294.

Nesbitt TC, Tanksley SD. Comparative sequencing in the genus Lycopersicon: implications for the evolution of fruit size in the domestication of cultivated tomatoes. Genetics (2002) 162:365–379

Oka HI. Origin of cultivated rice (1988) Amsterdam: Elsevier.

Osborn TC, Butrulle DV, Sharpe AG, Pickering KJ, Parkin IAP, Parker JS, Lydiate DJ. Detection and effects of a homeologous reciprocal transpostion in Brassica napus. Genetics. (2003) 165:1569–1577.

Osborn TC, Pires JC, Birchler JA, Auger DL, Chen ZJ, Lee HS, et al. Understanding mechanisms of novel gene expression in polyploids. Trends in Genetics (2003) 19:141–147.

Østergaard L, Kempin SA, Bies D, Klee HJ, Yanofsky MF. Pod shatter-resistant Brassica fruit produced by ecotopic expression of the FRUITFULL gene. Plant Biotechnology Journal (2006) 4:45–51.

Palaisa K, Morgante M, Tingey S, Rafalski A. Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep. (2004) 101. Proceedings of the National Academy of Sciences USA. 9885–9890.

Papa R, Bellucci E, Rossi M, Leonardi S, Rau D, Gepts P, Nanni L, Attene G. Tagging the signatures of domestication in common bean (Phaseolus vulgaris) by means of pooled DNA samples. Annals of Botany (2007) 100:1039–1051.

Paterson AH. What has QTL mapping taught us about plant domestication? New Phytologist (2002) 154:591–608.

Phillips RL. Genetic tools from nature and the nature of genetic tools. Crop Science (2006) 46:2245–2252.

Pickersgill B. Domestication of plants in the Americas: insights from Mendelian and molecular genetics. Annals of Botany (2007) 100:925–940.

Pourkheirandish M, Komatsuda T. The importance of barley genetics and domestication in a global perspective. Annals of Botany (2007) 100:999–1008.

Purugganan MD, Boyles AL, Suddith JI. Variation and selection at the CAULIFLOWER floral homeotic gene accompanying the evolution of domesticated Brassica oleracea. Genetics (2000) 155:855–862.

Quijada PA, Udall JA, Lambert B, Osborn TC. Quantitative trait analysis of seed yield and other complex traits in hybrid spring rapeseed (Brassica napus L.). 1. Identification of genomic regions from winter germplasm. Theoretical and Applied Genetics (2006) 113:549–561.

Rondeau P, Rouch C, Besnard G. NADP-malate dehydrogenase gene evolution in Andropogoneae (Poaceae): gene duplication followed by sub-functionalization. Annals of Botany (2005) 96:1307–1314.

Sang T, Ge S. The puzzle of rice domestication. Journal of Integrative Plant Biology (2007) 49:760–768.

Simons KJ, Fellers JP, Trick HN, Zhang Z, Tai Y-S, Gill BS, Faris JD. Molecular characterization of the major wheat domestication gene Q. Genetics. (2006) 172:547–555.

Sonnante G, Pignone D, Hammer K. The domestication of artichoke and cardoon: from Roman times to the genomic age. Annals of Botany (2007) 100:1095–1100.

Sweeney M, McCouch S. The complex history of the domestication of rice. Annals of Botany (2007) 100:951–957.

Takeda T, Suwa Y, Suzuki M, Kitano H, Ueguchi-Tanaka M, Ashikari M, Matsuoka M, Ueguchi C. The OsTB1 gene negatively regulates lateral branching in rice. The Plant Journal (2003) 33:513–520.

Tanksley SD, McCouch SR. Seed banks and molecular maps: unlocking genetic potential from the wild. Science (1997) 277:1063–1066.

Tanno K, Wilcox G. How fast was wild wheat domesticated? Science (2006) 311:1886.

Udall JA, Wendel JF. Polyploidy and crop improvement. Crop Science (2006) 46(S1):3–14.

Udall JA, Quijada PA, Lambert B, Osborn TC. Quantitative trait analysis of seed yield and other complex traits in hybrid spring rapeseed (Brassica napus L.). 2. Identification of alleles from unadapted germplasm. Theoretical and Applied Genetics (2006) 113:597–609.

Waines JG, Ehdaie B. Domestication and crop physiology: roots of green-revolution wheat. Annals of Botany (2007) 100:991–998.

Wang J, Tian L. Lee HS, Chen ZJ. Nonadditive regulation of FRI and FRC loci meditates flowering-time variation in Arabidopsis allopolyploids. Genetics (2006) 173:965–974.

Wang J, Tian L. Lee HS, Wei NE, Jiang H, Watson B, et al. Genomewide nonadditive gene regulation in Arabidopsis allotetraploids. Genetics (2006) 172:507–517.

Wang R-L, Stec A, Hey J, Lukens L, Doebley J. The limits of selection during maize domestication. Nature (1999) 398:236–239.

Weeden NF. Genetic changes accompanying the domestication of Pisum sativum: is there a common genetic basis to the. Annals of Botany (2007) 100:1017–1025. ‘domestication syndrome’ for legumes?

Whitt SR, Wilson LM, Tenaillon MI, Gaut BS, Buckler IV ES. Genetic diversity and selection in the maize starch pathway. (2002) 99. Proceedings of the National Academy of Sciences USA. 12959–12962.

Wright SI, Gaut BS. Molecular population genetics and the search for adaptive evolution in plants. Molecular Biology and Evolution (2005) 22:506–519.

Wuchty S, Jones BJ, Uzzi B. The increasing dominance of teams in production of knowledge. Science (2007) 316:1036–1039.

Yamamori M, Fujita S, Hayakawa K, Matsuki J, Yasui T. Genetic elimination of a starch granule protein, SGP-1, of wheat generates an altered starch with apparent high amylose. Theoretical and Applied Genetics (2000) 101:21–29.

Yamasaki M, Wright SI, McMullen MD. Genomic screening for artificial selection during domestication and improvement in maize. Annals of Botany (2007) 100:967–973.

Zeder MA, Bradley DG, Emshwiller E, Smith BD. Documenting domestication: new genetic and archaeological paradigms. (2006) Berkeley, CA: University of California Press.

Zhang ZH, Qu X, Wan S, Chen Sh, Zhu Y. Comparison of QTL controlling seedling vigour under different temperature conditions using recombinant inbred lines in rice (Oryza sativa). Annals of Botany (2005) 95:423–429.

Zhu Q, Zheng X, Luo J, Gaut BS, Ge S. Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice. Molecular Biology and Evolution (2007) 24:875–888.

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