- Carotenoid Biosynthesis in Cyanobacteria: Structural and Evolutionary Scenarios Based on Comparative Genomics

1. Olson JA, Krinsky NI. The colorful, fascinating world of the carotenoids: important physiologic modulators. FASEB J. 1995 ;9:1547-1550

2. Altermann W, Kazmierczak J. Archean microfossils: a reappraisal of early life on Earth. Res Microbiol. 2003 ;154:611-617

3. Schopf JW. Microfossils of the early Archean apex chert: new evidence of the antiquity of life. Science. 1993 ;260:640-646

4. Bryant DA. The molecular biology of cyanobacteria. Kluwer Academic publishers. 1996:559-579

5. Steiger S, Jackisch Y, Sandmann G. Carotenoid biosynthesis in Maresca Gloeobacter violaceus PCC7421 involves a single crtI-type phytoene desaturase instead of typical cyanobacterial enzymes. Arch Microbiol. 2005 ;184:207-214

6. Takaichi S, Maoka T, Masamoto K. Myxoxanthophyll in Synechocystis sp PCC 6803 is Myxol 2'-Dimethyl-Fucoside, (3R,2'S)-Myxol 2'-(2,4-di-O-Methyl-α-L-Fucoside), not rhamnoside. Plant Cell Physiol. 2001 ;42:756-762

7. Takaichi S, Mochimaru M, Maoka T, Katoh H. Myxol and 4-ketomyxol 2'-fucosides, not rhamnosides, from Anabaena sp. PCC 7120 and Nostoc punctiforme PCC 73102, and proposal for the biosynthetic pathway of carotenoids. Plant Cell Physiol. 2005 ;46:497-504

8. Armstrong GA, Alberti M, Hearst JE. Conserved enzymes mediate the early reactions of carotenoid biosynthesis in nonphotosynthetic and photosynthetic prokaryotes. Proc Natl Acad Sci USA. 1990 ;87:9975- 9979

9. Armstrong GA. Genetics of eubacterial carotenoid biosynthesis: a colorful tale. Annu Rev Microbiol. 1997 ;51:629- 659

10. Phadwal K. Carotenoid biosynthetic pathway: molecular phylogenies and evolutionary behavior of crt genes in eubacteria. Gene. 2005 ;345:35- 43

11. Sandmann G. Molecular evolution of carotenoid biosynthesis from bacteria to plants. Physiol Plant. 2002 ;116:431-572

12. Sandmann G. Phytoene desaturases: genes, enzymes and phylogenetic aspects. J Plant Physiol. 1994 ;143:444-447

13. Linden H, Misawa N, Saito T, Sandmann G. A novel carotenoid biosynthesis gene coding for ζ-carotene desaturase: functional expression, sequence and phylogenetic origin. Plant Mol Biol. 1994 ;24:369-379

14. Breitenbach J, Fernández-González B, Vioque A, Sandmann G. A higher-plant type ζ-carotene desaturase in the cyanobacterium Synechocystis PCC 6803. Plant Mol Biol. 1998 ;36:725-732

15. Fernández-Gonzalez B, Sandmann G, Vioque A. A new type of asymmetrically acting β-carotene ketolase is required for the synthesis of echinenone in the cyanobacterium Synechocystis sp. PCC 6803. J Biol Chem. 1997 ;272:9728-9733

16. Misawa N, Satomi Y, Kondo K, Yam AY, Kajiwara S, Saito T, Ohtani T, Miki W. Structure and functional analysis of a marine bacterial carotenoid biosynthesis gene cluster and astaxanthin biosynthetic pathway proposed at the gene level. J Bacteriol. 1995 ;177:6575-6584

17. Steiger S, Sandmann G. Cloning of two carotenoid ketolase genes from Nostoc punctiforme for the heterologous production of canthaxanthin and astaxanthin. Biotech Lett. 2004 ;26:813-817

18. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990 ;215:403-410

19. Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD. Multiple sequences alignment with the clustal series of programs. Nucleic Acids Res. 2003 ;31:3497-3500

20. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: exible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997 ;25:4876-4882

21. Schultz J, Milpetz F, Bork P, Ponting CP. SMART, a simple modular architecture research tool: Identification of signaling domains. Proc Natl Acad Sci USA. 1998 ;95:5857-5864

22. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. J Mol Evol. 1987 ;4:406-425

23. Kumar S, Tamura K, Jakobsen IB. MEGA2: Molecular evolutionary genetics analysis software. Bioinformatics. 2001 ;17:1244-1245

24. Honda D, Yokota D, Sugiyama J. Detection of seven major evolutionary lineages in cyanobacteria based on the 16S rRNA gene sequence analysis with new sequences of five marine Synechococcus strains. J Mol Evol. 1999 ;48:723-739

25. Krubasik P, Sandmann G. Molecular evolution of lycopene cyclases involved in the formation of carotenoids with ionone end groups. Biochemical Society Transactions. 2000 ;28:806-810

26. Maresca JA, Frigaard NF, Bryant DA. Identification of a novel class of lycopene cyclases in photosynthetic bacteria. In: (ed.) van der Est A, Bruce D. Photosynthesis: Fundamental Aspects to Global Perspectives. Allen Press. 2005

27. Mochimaru M, Masukawa H, Takaichi S. The cyanobacterium Anabaena sp. PCC 7120 has two distinct β-carotene ketolases: CrtO for echinenone and CrtW for ketomyxol synthesis. FEBS Letters. 2005 ;579:6111-6114

28. Krubasik P, Sandmann G. A carotenogenic gene cluster from Brevibacterium linens with novel lycopene cyclase genes involved in the synthesis of aromatic carotenoids. Mol Gen Genet. 2000 ;263:423-432

29. Viveiros M, Krubasik P, Sandmann G, Houssaini-Iraqui M. Structural and functional analysis of the gene cluster encoding carotenoid biosynthesis in Mycobacterium aurum A+. FEMS Microbiol Lett. 2000 ;187:95-101

30. Sedkova N, Tao L, Rouvière PE, Cheng Q. Diversity of carotenoid synthesis gene clusters from environmental Enterobacteriaceae strains. Appl Environ Microb. 2005 ;17:8141-8146

31. Itoh T, Takemoto K, Mori H, Gojobori T. Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes. Mol Biol Evol. 1999 ;16:332-346

32. Omelchenko MV, Makarova KS, Wolf YI, Rogozin IB, Koonin EV. Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ. Genome Biol. 2003 ;4:R55

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