table of contents table of contents

Home » Biology Articles » Genetics » Genomics » Canine Genomics and Genetics: Running with the Pack » References

- Canine Genomics and Genetics: Running with the Pack

  1. Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, et al. (2005) Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature In press.
  2. Sutter NB, Ostrander EA (2004) Dog star rising: The canine genetic system. Nat Rev Genet 5: 900–910.
  3. Patterson D (2000) Companion animal medicine in the age of medical genetics. J Vet Internal Med 14: 1–9.
  4. Ostrander EA, Wayne RK (2005) The canine genome. Genome Res In press.
  5. Breen M, Bullerdiek J, Langford CF (1999) The DAPI banded karyotype of the domestic dog (Canis familiaris) generated using chromosome-specific paint probes. Chromosome Res 7: 401–406.
  6. Yang F, O'Brien PC, Milne BS, Graphodatsky AS, Solanky N, et al. (1999) A complete comparative chromosome map for the dog, red fox, and human and its integration with canine genetic maps. Genomics 62: 189–202.
  7. Sargan DR, Yang F, Squire M, Milne BS, O'Brien PC, et al. (2000) Use of flow-sorted canine chromosomes in the assignment of canine linkage, radiation hybrid, and syntenic groups to chromosomes: Refinement and verification of the comparative chromosome map for dog and human. Genomics 69: 182–195.
  8. Neff MW, Broman KW, Mellersh CS, Ray K, Acland GM, et al. (1999) A second-generation genetic linkage map of the domestic dog, Canis familiaris Genetics 151: 803–820. 
  9. Langford CF, Fischer PE, Binns MM, Holmes NG, Carter NP (1996) Chromosome-specific paints from a high-resolution flow karyotype of the dog. Chromosome Res 4: 115–123.
  10. Breen M, Langford CF, Carter NP, Holmes NG, Dickens HF, et al. (1999) FISH mapping and identification of canine chromosomes. J Hered 90: 27–30.
  11. Kirkness EF, Bafna V, Halpern AL, Levy S, Remington K, et al. (2003) The dog genome: Survey sequencing and comparative analysis. Science 301: 1898–1903.
  12. Breen M, Hitte C, Lorentzen TD, Thomas R, Cadieu E, et al. (2004) An integrated 4249 marker FISH/RH map of the canine genome. BMC Genomics 5: 1–11.
  13. Guyon R, Kirkness EF, Lorentzen TD, Hitte C, Comstock KE, et al. (2003) Building comparative maps using 1.5x sequence coverage: Human chromosome 1p and the canine genome. Cold Spring Harb Symp Quant Biol 68: 171–177.
  14. Guyon R, Lorentzen TD, Hitte C, Kim L, Cadieu E, et al. (2003) A 1-Mb resolution radiation hybrid map of the canine genome. Proc Natl Acad Sci U S A 100: 5296–5301.
  15. Breen M, Jouquand S, Renier C, Mellersh CS, Hitte C, et al. (2001) Chromosome-specific single-locus FISH probes allow anchorage of an 1800-marker integrated radiation-hybrid/linkage map of the domestic dog genome to all chromosomes. Genome Res 11: 1784–1795.
  16. Hitte C, Madeoy J, Kirkness EF, Priat C, Lorentzen TD, et al. (2005) Survey sequencing combined with dense radiation hybrid gene mapping facilitates genome navigation. Nat Rev Genet In press.
  17. Murphy WJ, Larkin DM, Everts-van der Wind A, Bourque G, Tesler G, et al. (2005) Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps. Science 309: 613–617.
  18. Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. (2001) Initial sequencing and analysis of the human genome. Nature 409: 860–921.
  19. Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, et al. (2001) The sequence of the human genome. Science 291: 1304–1351.
  20. Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, et al. (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520–562.
  21. Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, et al. (2004) Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 428: 493–521.
  22. Galibert F, Andre C, Cheron A, Chuat JC, Hitte C, et al. (1998) The importance of the canine model in medical genetics. Bull Acad Natl Med 182: 811–821. 
  23. Ostrander EA, Giniger E (1997) Semper fidelis: What man's best friend can teach us about human biology and disease. Am J Hum Genet 61: 475–480.
  24. Patterson DF, Haskins ME, Jezyk PF (1982) Models of human genetic disease in domestic animals. Adv Hum Genet 12: 263–339.
  25. Minnick MF, Stillwell LC, Heineman JM, Stiegler GL (1992) A highly repetitive DNA sequence possibly unique to canids. Gene 110: 235–238.
  26. Bentolila S, Bach JM, Kessler JL, Bordelais I, Cruaud C, et al. (1999) Analysis of major repetitive DNA sequences in the dog (Canis familiaris) genome. Mamm Genome 10: 699–705.
  27. Vassetzky NS, Kramerov DA (2002) CAN—A pan-carnivore SINE family. Mamm Genome 13: 50–57. 
  28. Schmid CW (1996) Alu: Structure, origin, evolution, significance and function of one-tenth of human DNA. Prog Nucleic Acid Res Mol Biol 53: 283–319.
  29. Coltman DW, Wright JM (1994) Can SINEs: A family of tRNA-derived retroposons specific to the superfamily Canoidea. Nucleic Acids Res 22: 2726–2730.
  30. Kirkness EF (2006) SINEs of canine genomic diversity. In: Ostrander EA, Giger U, Lindblad-Toh K The dog and its genome Cold Spring Harbor (New York): Cold Spring Harbor Press. In press.
  31. Lin L, Faraco J, Li R, Kadotani H, Rogers W, et al. (1999) The sleep disorder canine narcolepsy is caused by a mutation in the hypocretin (orexin) receptor 2 gene. Cell 98: 365–376. 
  32. Pele M, Tiret L, Kessler JL, Blot S, Panthier JJ (2005) SINE exonic insertion in the PTPLA gene leads to multiple splicing defects and segregates with the autosomal recessive centronuclear myopathy in dogs. Hum Mol Genet 14: 1417–1427. 
  33. Lohi H, Young EJ, Fitzmaurice SN, Rusbridge C, Chan EM, et al. (2005) Expanded repeat in canine epilepsy. Science 307: 81.
  34. Sargan D (2004) IDID: Inherited diseases in dogs: Web-based information for canine inherited disease genetics. Mamm Genome 15: 503–506.
  35. Switonski M, Szczerbal I, Nowacka J (2004) The dog genome map and its use in mammalian comparative genomics. J Appl Genet 45: 195–214.
  36. Ostrander EA, Galibert F, Patterson DF (2000) Canine genetics comes of age. Trends Genet 16: 117–124.
  37. Sidjanin DJ, Lowe JK, McElwee JL, Milne BS, Phippen TM, et al. (2002) Canine CNGB3 mutations establish cone degeneration as orthologous to the human achromatopsia locus ACHM3. Hum Mol Genet 11: 1823–1833. 
  38. Lingaas F, Comstock KE, Kirkness EF, Sorensen A, Aarskaug T, et al. (2003) A mutation in the canine BHD gene is associated with hereditary multifocal renal cystadenocarcinoma and nodular dermatofibrosis in the German Shepherd dog. Hum Mol Genet 12: 3043–3053.
  39. Riser W (1973) The dysplastic hip joint: It's radiographic and histologic development. J Am Vet Radiol Soc 14: 35–50. 
  40. Olsson SE, Marshall JL, Story E (1972) Osteophytosis of the knee joint in the dog. A sign of instability. Acta Radiol Suppl 319: 165–167.
  41. Maki K, Janss LL, Groen AF, Liinamo AE, Ojala M (2004) An indication of major genes affecting hip and elbow dysplasia in four Finnish dog populations. Heredity 92: 402–408.
  42. Bliss S, Todhunter RJ, Quaas R, Casella G, Wu R, et al. (2002) Quantitative genetics of traits associated with hip dysplasia in a canine pedigree constructed by mating dysplastic Labrador Retrievers with unaffected Greyhounds. Am J Vet Res 63: 1029–1035.
  43. LaFond E, Breur GJ, Austin CC (2002) Breed susceptibility for developmental orthopedic diseases in dogs. J Am Anim Hosp Assoc 38: 467–477.
  44. Smith GK, Mayhew PD, Kapatkin AS, McKelvie PJ, Shofer FS, et al. (2001) Evaluation of risk factors for degenerative joint disease associated with hip dysplasia in German Shepherd Dogs, Golden Retrievers, Labrador Retrievers, and Rottweilers. J Am Vet Med Assoc 219: 1719–1724.
  45. Todhunter RJ, Bliss SP, Casella G, Wu R, Lust G, et al. (2003) Genetic structure of susceptibility traits for hip dysplasia and microsatellite informativeness of an outcrossed canine pedigree. J Hered 94: 39–48.
  46. Kealy RD, Lawler DF, Ballam JM, Lust G, Biery DN, et al. (2000) Evaluation of the effect of limited food consumption on radiographic evidence of osteoarthritis in dogs. J Am Vet Med Assoc 217: 1678–1680.
  47. Kealy RD, Lawler DF, Ballam JM, Lust G, Smith GK, et al. (1997) Five-year longitudinal study on limited food consumption and development of osteoarthritis in coxofemoral joints of dogs. J Am Vet Med Assoc 210: 222–225.
  48. Leighton EA, Linn JM, Willham RL, Castelberry MW (1977) A genetic study of canine hip dysplasia. Am J Vet Res 38: 241–244. 
  49. Chase K, Lawler DF, Adler FR, Ostrander EA, Lark KG (2004) Bilaterally asymmetric effects of quantitative trait loci (QTLs): QTLs that affect laxity in the right versus left coxofemoral (hip) joints of the dog (Canis familiaris). Am J Med Genet A 124: 239–247.
  50. Chase K, Lawler DF, Carrier DR, Lark KG (2005) Genetic regulation of osteoarthritis: A QTL regulating cranial and caudal acetabular osteophyte formation in the hip joint of the dog (Canis familiaris). Am J Hum Genet 135: 334–335. 
  51. Todhunter R, Acland G, Olivier M, Williams A, Vernier-Singer M, et al. (1999) An outcrossed canine pedigree for linkage analysis of hip dysplasia. J Hered 83–92.
  52. Bliss S, Todhunter RJ, Quaas R, Casella G, Wu R, et al. (2002) Quantitative genetics of traits associated with hip dysplasia in a canine pedigree constructed by mating dysplastic Labrador Retrievers with unaffected Greyhounds. Am J Vet Res 63: 1029–1035. 
  53. Todhunter RJ, Casella G, Bliss SP, Lust G, Williams AJ, et al. (2003) Power of a Labrador Retriever-Greyhound pedigree for linkage analysis of hip dysplasia and osteoarthritis. Am J Vet Res 64: 418–424.
  54. Braund K, Miller DF (1986) The complete Portuguese water dog New York: Howell Book House. 304 p.
  55. Molinari C (1993) The Portuguese water dog Portugal: ELO-Publicidade. 156 p.
  56. Chase K, Adler FR, Miller-Stebbings K, Lark KG (1999) Teaching a new dog old tricks: Identifying quantitative trait loci using lessons from plants. J Hered 90: 43–51.
  57. Lark KG, Chase K, Carrier DR, Adler FR, editors (2006) Genetic analysis of the canid skeleton: Morphological loci in the Portuguese water dog population. Cold Spring Harbor (New York): Cold Spring Harbor Press In press.
  58. Chase K, Carrier DF, Adler FR, Ostrander EA, Lark KG (2005) Size sexual dimorphism in Portugese water dogs: Interaction between an autosome and the X chromsome. Genome Res In press.
  59. Fondon JW 3rd, Garner HR (2004) Molecular origins of rapid and continuous morphological evolution. Proc Natl Acad Sci U S A 101: 18058–18063.
  60. Koskinen MT, Bredbacka P (2000) Assessment of the population structure of five Finnish dog breeds with microsatellites. Anim Genet 31: 310–317.
  61. Koskinen MT (2003) Individual assignment using microsatellite DNA reveals unambiguous breed identification in the domestic dog. Anim Genet 34: 297–301. 
  62. Irion DN, Schaffer AL, Famula TR, Eggleston ML, Hughes SS, et al. (2003) Analysis of genetic variation in 28 dog breed populations with 100 microsatellite markers. J Hered 94: 81–87.
  63. Parker HG, Kim LV, Sutter NB, Carlson S, Lorentzen TD, et al. (2004) Genetic structure of the purebred domestic dog. Science 304: 1160–1164.
  64. Hyun C, Filippich LJ, Lea RA, Shepherd G, Hughes IP, et al. (2003) Prospects for whole genome linkage disequilibrium mapping in domestic dog breeds. Mamm Genome 14: 640–649.
  65. Lou XY, Todhunter RJ, Lin M, Lu Q, Liu T, et al. (2003) The extent and distribution of linkage disequilibrium in a multi-hierarchic outbred canine pedigree. Mamm Genome 14: 555–564.
  66. Sutter NB, Eberle MA, Parker HG, Pullar BJ, Kirkness EF, et al. (2004) Extensive and breed-specific linkage disequilibrium in Canis familiaris. Genome Res 14: 2388–2396.
  67. Modiano JF, Breen M, Burnett RC, Parker HG, Inusah S, et al. (2005) Distinct B-cell and T-cell lymphoproliferative disease prevalence among dog breeds indicates heritable risk. Cancer Res 65: 5654–5661.
  68. Neff MW, Robertson KR, Wong AK, Safra N, Broman KW, et al. (2004) Breed distribution and history of canine mdr1-1Delta, a pharmacogenetic mutation that marks the emergence of breeds from the collie lineage. Proc Natl Acad Sci U S A 101: 11725–11730.
  69. Pritchard JK, Stephens M, Donnelly P (2000) Inferrence of population structure using multilocus genotype data. Genetics 155: 945–959.

rating: 3.00 from 6 votes | updated on: 28 Jul 2007 | views: 17560 |

Rate article: