such as "Introduction", "Conclusion"..etc
Fig. 1. Bayesian radial tree showing position of T. koningii aggregate species on Hypocrea/Trichoderma phylogeny based on partial rpb2 sequences. Arrows indicate branches leading to currently recognized clades within the genus in sense of Chaverri & Samuels (2003), Druzhinina et al. (2005) and the present work. Circles at nodes indicate the posterior probability coefficients higher 0.95 as they were obtained after 3 million generations. All sequences except T. koningii CBS 979.70 DQ641671 and H. novaezelandiae G.J.S. 81-264 DQ 641672 were retrieved from NCBI GenBank as follows: H. voglmayrii CBS 117710 DQ086151; T. viride VD G.J.S. 89-127 AF545521; T. pubescens CBS 345.93 AF545552; T. hamatum CBS 102160 AF545548; T. strigosum CBS 348.93 AF545556; H. minutispora CBS 901.72 AY481588; H. pachybasioides CBS 820.68 DQ087238; H. pilulifera CBS 814.68 AF545519; H. citrina CBS 894.85 AF545561; H. pulvinata G.J.S. 98-104 AF545559; H. melanomagna CBS 114236 AY391926; H. lutea G.J.S. 89-129 AF545517; T. oblongisporum CBS 344.98 AF545551; T. fertile CBS 339.93 AF545546; H. chlorospora CBS 114231 AY391903; H. sinuosa CBS 114247 AY391942; H. aureoviridis CBS 245.63 AF545509; H. strictipilosa G.J.S 98-91 AF545538; T. spirale CBS 346.93 AF545553; T. aggressivum CBS 100525 AF545541; H. tawa CBS 114233 AY391956; H. lixii CBS 226.95 AF545549; H. catoptron CBS 114232 AY391900; T. tomentosum DAOM 178713a AF545557; H. gelatinosa CBS 114246 AY391924; T. helicum DAOM 230021 DQ087239; T. rossicum TUB F-718 DQ087240; H. jecorina TUB F-430 DQ087241; T. longibrachiatum CBS 816.68 DQ087242; T. saturnisporum CBS 330.70 DQ087243; H. schweinitzii G.J.S. 01-364 AF545565.
Fig. 2. Bayesian radial phylogram showing the structure of the 'Viride' Clade as it was inferred based on sequences of two introns of tef1. Grey colour is used to separate specimens which are not discussed in this study but whose sequences were used to produce the multiple sequence alignment. Arrows indicate branches leading to species recognized within T. koningii aggregate species. In the highlighted part of the tree, grey filled circles at nodes indicate posterior probability coefficients higher than 0.90 as they were obtained after 5 million generations; black filled circles at nodes show support higher than 0.95. Font colours correspond to regions of sampling on the schematic map. Clades identified as "PS A–F" in the lower half of the tree represent undescribed phylogenetic species (see Table 1).
Fig. 3. (Page 77). The concordance between two Bayesian phylograms as inferred based on partial act and cal gene sequences. Black circles at nodes indicate the posterior probability coefficients higher than 0.95 as they were obtained after 3 million generations. Grey circles in the cal tree indicate differences in topology when compared to the same isolates in the act tree. Taxon "PS A" indicates an undescribed phylogenetic species (see Table 1).
Fig. 4. Principal Components Analysis, scatter plot of Eigen vectors. See Table 2 for statistics.
Fig. 5. Growth rate curves after 72 h in darkness for the taxa considered. Dashed line = SNA; solid line = PDA. Standard error bars are indicated.
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