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<p>..................................................</p> <p><em><strong>Fig. 1.</strong> Bayesian radial tree showing position of T. koningii aggregate species on Hypocrea/Trichoderma phylogeny based on partial rpb2 sequences. Arrows indicate branches leading to currently recognized clades within the genus in sense of Chaverri & Samuels (2003), Druzhinina et al. (2005) and the present work. Circles at nodes indicate the posterior probability coefficients higher 0.95 as they were obtained after 3 million generations. All sequences except T. koningii </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=979.70&link_type=CBS"><em>CBS 979.70</em></a><em> DQ641671 and H. novaezelandiae G.J.S. 81-264 DQ 641672 were retrieved from NCBI GenBank as follows: H. voglmayrii </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=117710&link_type=CBS"><em>CBS 117710</em></a><em> DQ086151; T. viride VD G.J.S. 89-127 AF545521; T. pubescens </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=345.93&link_type=CBS"><em>CBS 345.93</em></a><em> AF545552; T. hamatum </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=102160&link_type=CBS"><em>CBS 102160</em></a><em> AF545548; T. strigosum </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=348.93&link_type=CBS"><em>CBS 348.93</em></a><em> AF545556; H. minutispora </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=901.72&link_type=CBS"><em>CBS 901.72</em></a><em> AY481588; H. pachybasioides </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=820.68&link_type=CBS"><em>CBS 820.68</em></a><em> DQ087238; H. pilulifera </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=814.68&link_type=CBS"><em>CBS 814.68</em></a><em> AF545519; H. citrina </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=894.85&link_type=CBS"><em>CBS 894.85</em></a><em> AF545561; H. pulvinata G.J.S. 98-104 AF545559; H. melanomagna </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=114236&link_type=CBS"><em>CBS 114236</em></a><em> AY391926; H. lutea G.J.S. 89-129 AF545517; T. oblongisporum </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=344.98&link_type=CBS"><em>CBS 344.98</em></a><em> AF545551; T. fertile </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=339.93&link_type=CBS"><em>CBS 339.93</em></a><em> AF545546; H. chlorospora </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=114231&link_type=CBS"><em>CBS 114231</em></a><em> AY391903; H. sinuosa </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=114247&link_type=CBS"><em>CBS 114247</em></a><em> AY391942; H. aureoviridis </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=245.63&link_type=CBS"><em>CBS 245.63</em></a><em> AF545509; H. strictipilosa G.J.S 98-91 AF545538; T. spirale </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=346.93&link_type=CBS"><em>CBS 346.93</em></a><em> AF545553; T. aggressivum </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=100525&link_type=CBS"><em>CBS 100525</em></a><em> AF545541; H. tawa </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=114233&link_type=CBS"><em>CBS 114233</em></a><em> AY391956; H. lixii </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=226.95&link_type=CBS"><em>CBS 226.95</em></a><em> AF545549; H. catoptron </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=114232&link_type=CBS"><em>CBS 114232</em></a><em> AY391900; T. tomentosum DAOM 178713a AF545557; H. gelatinosa </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=114246&link_type=CBS"><em>CBS 114246</em></a><em> AY391924; T. helicum DAOM 230021 DQ087239; T. rossicum TUB F-718 DQ087240; H. jecorina TUB F-430 DQ087241; T. longibrachiatum </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=816.68&link_type=CBS"><em>CBS 816.68</em></a><em> DQ087242; T. saturnisporum </em><a href="http://www.studiesinmycology.org/cgi/external_ref?access_num=330.70&link_type=CBS"><em>CBS 330.70</em></a><em> DQ087243; H. schweinitzii G.J.S. 01-364 AF545565.</em></p> <p><img alt="" src="/user_files/Image/Biogeography/koningii aggregate f01.GIF"></p> <p>..................................................</p> <p><em><strong>Fig. 2.</strong> Bayesian radial phylogram showing the structure of the 'Viride' Clade as it was inferred based on sequences of two introns of tef1. Grey colour is used to separate specimens which are not discussed in this study but whose sequences were used to produce the multiple sequence alignment. Arrows indicate branches leading to species recognized within T. koningii aggregate species. In the highlighted part of the tree, grey filled circles at nodes indicate posterior probability coefficients higher than 0.90 as they were obtained after 5 million generations; black filled circles at nodes show support higher than 0.95. Font colours correspond to regions of sampling on the schematic map. Clades identified as "PS A–F" in the lower half of the tree represent undescribed phylogenetic species (see Table 1).</em></p> <p><img alt="" src="/user_files/Image/Biogeography/koningii aggregate f02.GIF"></p> <p>..................................................</p> <p><em><strong>Fig. 3.</strong> (Page 77). The concordance between two Bayesian phylograms as inferred based on partial act and cal gene sequences. Black circles at nodes indicate the posterior probability coefficients higher than 0.95 as they were obtained after 3 million generations. Grey circles in the cal tree indicate differences in topology when compared to the same isolates in the act tree. Taxon "PS A" indicates an undescribed phylogenetic species (see Table 1).</em></p> <p><img alt="" src="/user_files/Image/Biogeography/koningii aggregate f03.GIF"></p> <p>..................................................</p> <p><em><strong>Fig. 4.</strong> Principal Components Analysis, scatter plot of Eigen vectors. See Table 2 for statistics.</em></p> <p><img alt="" src="/user_files/Image/Biogeography/koningii aggregate f04.GIF"></p> <p>..................................................</p> <p><em><strong>Fig. 5.</strong> Growth rate curves after 72 h in darkness for the taxa considered. Dashed line = SNA; solid line = PDA. Standard error bars are indicated.</em></p> <p><img alt="" src="/user_files/Image/Biogeography/koningii aggregate f05.GIF"></p> <p>..................................................</p> <p><em></em></p>
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