such as "Introduction", "Conclusion"..etc
Mathematical analysis of metabolic pathways
The in-depth mathematical analysis of a pathway of interestwill generally consist of two main steps, which are (i) investigationof the structural properties and capabilities of the pathwaywith tools such as CellNetAnalyzer (25) and (ii) detailed analysisof the kinetic characteristics of the system with modellingand simulation tools such as COPASI (11). MetaCrop supportsthese processes at various steps. It contains all necessaryinformation for structural pathway analysis, and for centralmetabolism also detailed kinetic data for kinetic pathway analysis.Furthermore, the above-mentioned tools are able to read thefiles exported from MetaCrop in the standardized SBML format(10). Once imported into these tools, the pathways can serveas a starting point for structural or kinetic metabolic models.
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