Dictionary » Q » Quenching

Quenching

quenching

1. The process of extinguishing, removing, or diminishing a physical property such as heat or light; e.g., the cooling of a hot metal rapidly by plunging it into water or oil.

2. In beta liquid scintillation counting, the shifting of the energy spectrum from a true to a lower energy; it is caused by a variety of interfering materials in the counting solution, including foreign chemicals and colouring agents.

3. The process of stopping a chemical or enzymatic reaction.

Origin: M. E. Quenchen, fr. O.E. Acwencan

fluorescence quenching, a technique used in investigations dealing with binding of antigens (haptens) by purified antibodies, applicable in cases in which the bound antigen (hapten) absorbs (quenches) light emitted during fluorescence of protein (antibody) excited by ultraviolet light.


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SYBR gold in acrylamide gel

... so I don't know if that sort of thing happens or not. Another possibilty, I suppose, is that your sample got stuck in the well, but if there is no quenching, I would guess you would have seen your wells light up. I assume you've done it more than once, so there is no possibility that it's just ...

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by blcr11
Thu Oct 30, 2008 1:53 pm
 
Forum: Molecular Biology
Topic: SYBR gold in acrylamide gel
Replies: 4
Views: 1029

How can I determine lysozyme activity?

... on Micrococcus lysodeikticus cell walls, which are labeled to such a degree that the fluorescence is quenched. Lysozyme action can relieve this quenching, yielding a dramatic increase in fluorescence that is proportional to lysozyme activity. The fluorescence increase can be measured using any ...

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by angelsmile
Tue Oct 21, 2008 2:30 am
 
Forum: Microbiology
Topic: How can I determine lysozyme activity?
Replies: 0
Views: 880

Re: enriching for DNA palindromes?

This may or may not work, but you could try quenching your annealing reaction by diluting and passing the mix over hydroxyapatite. Maybe you need to do the S1 reaction in the diluted sample prior to passing it over hydroxyapatite; not sure how ...

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by blcr11
Wed Aug 27, 2008 4:25 pm
 
Forum: Molecular Biology
Topic: enriching for DNA palindromes?
Replies: 2
Views: 574

DNA Protein Interactions Problems

... - which usually means a weak one - you have to almost be an anal-retentive with your conditions. Other possibilies might be a flourescence quenching assay where either the DNA or the protein is labeled with a fluorescent tag which is quenched by close approach to tryptophans usually. In ...

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by blcr11
Mon May 05, 2008 1:51 pm
 
Forum: Molecular Biology
Topic: DNA Protein Interactions Problems
Replies: 2
Views: 570

poly(dεA)

... intrinsic fluorescence of the adduct. Binding to protein disrupts the interbase interactions and thus enhances the fluorescence by removing the quenching. I have no idea if that is in fact what happens, though. I don't know if this will work or not, but I've attached a word file with the chemical ...

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by blcr11
Mon Sep 10, 2007 5:03 pm
 
Forum: Molecular Biology
Topic: poly(dεA)
Replies: 1
Views: 507
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