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Genbank

Genbank

a database of nucleic acid and protein sequences at the national library of medicine in the united states of America, compiled from international sources. It has sequence data in 13 different categories: primate, mammal, rodent, vertebrate, invertebrate, organelle, rna, bacteria, plant, virus, bacteriophage, synthetic, and other. It is similar to the european molecular biology lab gene bank in Germany.

WWW: Genebank


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bioinformTICS:

For the nucleotide sequence by using the genbank, embl , we can predict the nucleotide sequence and the protein sequence by using the swiss prot we can able to predict the structure and for the 3d structure by using pdb and scop we can able to ...

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by sathish
Tue Sep 01, 2009 8:41 am
 
Forum: Bioinformatics
Topic: bioinformTICS:
Replies: 2
Views: 44

I need immediate help!! How to PCR primer designing?

I need immediate help!! How to PCR primer designing? I know primer design based on comparison of sequences of specific gene from GenBank. Conserved regions were identified by using software Clustal X/W. Than primer A was designed based on the conserved amino acid sequence motif DD(T/I)(I/Y/F)D(A/V)Y(A/G). ...

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by veniesh
Sun Aug 16, 2009 8:54 am
 
Forum: Bioinformatics
Topic: I need immediate help!! How to PCR primer designing?
Replies: 1
Views: 89

What are today's bioinformatic bottlenecks?

... an answer in 10 seconds? ⋅ Or maybe database searching? You want to say "here's 10000 nucleotides, please search every genome in GenBank and give me the best hits from everything! In 2 seconds like a Google search does!!" ⋅ Or de novo assembly? Is is a huge problem ...

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by GerryB
Sat May 02, 2009 9:57 am
 
Forum: Bioinformatics
Topic: What are today's bioinformatic bottlenecks?
Replies: 1
Views: 441

RAPD and viruses

... way we found five pentamers and four hexamers. This primers theoretically do very good polymorphism in different genomes of this viruses found in genbank (NCBI). Simple but we have now very serious problems..and we are looking for miracle. Maybe someone on this phorum can help us. Please if you ...

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by AdamAdam
Sat Aug 16, 2008 11:40 am
 
Forum: Molecular Biology
Topic: RAPD and viruses
Replies: 0
Views: 959

DNA translation for publication

... let you include article titles in your references section. Most journals expect you to submit your sequence (assuming it's new) to a database like GenBank, and refer to the accession number in the body of the manuscript. Since the GenBank entry can contain both the sequence and its translation, ...

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by snowcapk
Tue Apr 22, 2008 9:13 pm
 
Forum: Molecular Biology
Topic: DNA translation for publication
Replies: 3
Views: 1146
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