Databases

Comprehensive List of transcription factor binding sites (TFBSs) databases based on ChIP-seq data as follows: (1) ChEA : transcription factor regulation inferred from integrating genome-wide ChIP-X experiments. release date: 2010 Oct. (2) ChIPBase : a database ...

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There are several lncRNA databases, ChIPBase, lncRNAdb, LNCipedia, NONCODE and NRED. (1) ChIPBase , ChIPBase is a database for annotating and exploring the expression profiles and the transcriptional regulation of lncRNAs and other ncRNAs.. ...

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Thats great. A lot off databases. Youc also find some databases in http://www.ebiozone.com

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... I tried searching for information I can compile into a signal propagation simulation, but could not quite advance yet. Although there are numerous databases available online, I found it very hard to draw a basic network of the protein-protein interactions (How can I know I have the complete network?). ...

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new miRNA target database. (1) ChIPBase , decoding the post-transcriptional and transcriptional regulation of microRNAs from CLIP-Seq and ChIP-Seq data. It constructed TF(transcription factor)->microRNA->targets regulatory networks. (2) doRiNA : a database of RNA interactions in post-transcri...

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