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Dictionary » D » Database

Database

Database

a structured file of information or a set of logically related data stored and retrieved using computer-based means.


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miRNA-mediated competing endogenous RNAs (ceRNAs) networks

ceRNABase have constructed pan-cancer ceRNA networks from tumor miRNA and mRNA expression profiles (TCGA 14 cancer types with >6000 tumor and normal samples). For example: known PTEN-ZEB2 ceRNA interactions can be supported in 13 cancer types .

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by rnaworld2110
Mon Mar 03, 2014 11:42 am
 
Forum: Cell Biology
Topic: miRNA-mediated competing endogenous RNAs (ceRNAs) networks
Replies: 2
Views: 1079

Re: Comprehensive List of long noncoding RNA(lncRNA) databases

This new database could be useful to many researchers interested in lncRNAs involved in respiratory infections caused by influenza and SARS-CoV viruses: (1) MONOCLdb , the MOuse NOnCode Lung database, a database for mouse long ...

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by monocldb
Sat Feb 08, 2014 7:22 pm
 
Forum: Molecular Biology
Topic: Comprehensive List of long noncoding RNA(lncRNA) databases
Replies: 2
Views: 1576

miRNA-mediated competing endogenous RNAs (ceRNAs) networks

A Nature paper has described ceRNA interactions between HMGA2 and TGFBR3. They show that Hmga2 promotes lung cancer progression in mouse and human cells by operating as a competing endogenous RNA (ceRNA) for the let-7 microRNA (miRNA) family. reference: HMGA2 functions as a competing endogenous RNA ...

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by rnaworld2110
Sat Jan 18, 2014 4:23 am
 
Forum: Cell Biology
Topic: miRNA-mediated competing endogenous RNAs (ceRNAs) networks
Replies: 2
Views: 1079

miRNA-mediated competing endogenous RNAs (ceRNAs) networks

... of lncRNAs and protein-coding genes from ceRNA regulatory networks. website: http://starbase.sysu.edu.cn/mrnaCeRNA.php 2. Competing endogenous RNA database : predicted ceRNA candidates from genome. website: http://www.oncomir.umn.edu/cefinder/ ceRNA References: 1. HMGA2 functions as a competing ...

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by rnaworld2110
Sun Dec 15, 2013 9:29 am
 
Forum: Cell Biology
Topic: miRNA-mediated competing endogenous RNAs (ceRNAs) networks
Replies: 2
Views: 1079

Re: Comprehensive List of long noncoding RNA(lncRNA) databases

... pseudogenes) and miRNA-ceRNA interaction networks from CLIP-Seq datasets. website: http://starbase.sysu.edu.cn/mirLncRNA.php (2) LncRNADisease – a database for long-non-coding RNA-associated diseases. website: http://cmbi.bjmu.edu.cn/lncrnadisease (3) PLncDB : Plant Long noncoding RNA Database. ...

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by rnaworld2110
Thu Nov 21, 2013 4:38 pm
 
Forum: Molecular Biology
Topic: Comprehensive List of long noncoding RNA(lncRNA) databases
Replies: 2
Views: 1576
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