Char

... 1 39205 40430 - NC_004325.1 39205 40430 - MAL1P4.02 5833 1 50586 51859 + NC_004325.1 50586 51859 + MAL1P4.04 The 3rd column represents the start char of the gene in the chromosome, and the 4th column represents the stop char of the gene in the chromosome. The 5th column represents the orientation ...

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... placeholders) $sequence =~ s/$query/...../g; #cuts sequence into array of individual letters chomp $sequence; @chars = split(//, $sequence); for ($i=0; $i<=$#chars; $i++) { if($char[$i] eq "."){ push(@found, $i); $i=$i+$offset; } } print ...

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