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- Tue Sep 18, 2012 9:52 pm
- Forum: Bioinformatics
- Topic: MUSCLE multiple sequence alignment substitution matrix
- Replies: 0
- Views: 3485
I'm using MUSCLE to construct a multiple sequence alignment. Problem is, I have no idea what amino acid substitution matrix MUSCLE uses (I'm using the online version of MUSCLE, here: m). In short, I don't see anyplace that I can change the parameters or select an amino acid matrix. I've searched the...