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Comprehensive List of long noncoding RNA(lncRNA) databases

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Comprehensive List of long noncoding RNA(lncRNA) databases

Postby rnaworld2110 » Fri Dec 14, 2012 6:07 am

There are several lncRNA databases, ChIPBase, lncRNAdb, LNCipedia, NONCODE and NRED.

(1) ChIPBase, ChIPBase is a database for annotating and exploring the expression profiles and the transcriptional regulation of lncRNAs and other ncRNAs.. website: http://deepbase.sysu.edu.cn/chipbase/

(2) lncRNAdb, contains a comprehensive list of lncRNAs that have been shown to have, or to be associated with, biological functions in eukaryotes, as well as messenger RNAs that have regulatory roles. website: http://www.lncrnadb.org/

(3) LNCipedia: a database for annotated human lncRNA transcript sequences and structures.website: http://www.lncipedia.org

(4) NONCODE, NONCODE provides an integrative annotation of long noncoding RNAs. website: http://www.noncode.org

(5) NRED (ncRNA Expression Database), provides gene expression information for thousands of long ncRNAs in human and mouse. It also contains both microarray and in situ hybridization data, much of which is described here for the first time. website: http://jsm-research.imb.uq.edu.au/nred/
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Re: Comprehensive List of long noncoding RNA(lncRNA) databases

Postby rnaworld2110 » Thu Nov 21, 2013 4:38 pm

seveal novel lncRNA resources have been published:

(1) lncRNABase, for decoding miRNA-lncRNA(lncRNAs, circRNAs, pseudogenes) and miRNA-ceRNA interaction networks from CLIP-Seq datasets. website: http://starbase.sysu.edu.cn/mirLncRNA.php

(2) LncRNADisease– a database for long-non-coding RNA-associated diseases. website: http://cmbi.bjmu.edu.cn/lncrnadisease

(3) PLncDB: Plant Long noncoding RNA Database. website: http://chualab.rockefeller.edu/gbrowse2/homepage.html
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Re: Comprehensive List of long noncoding RNA(lncRNA) databases

Postby monocldb » Sat Feb 08, 2014 7:22 pm

This new database could be useful to many researchers interested in lncRNAs involved in respiratory infections caused by influenza and SARS-CoV viruses:

(1) MONOCLdb, the MOuse NOnCode Lung database, a database for mouse long non-coding RNAs (lncRNA) involved in Influenza and SARS-CoV infections. website: http://www.monocldb.org
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