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TLDA screening analysis

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TLDA screening analysis

Postby laurentPre » Fri Jan 17, 2014 12:59 pm

Hello,

I am looking for a software to analyze a large number of files from a screening analysis of TLDA. We have a Workflow in R for analyzing exported .txt files, but we haven't software to analyze all the plates at once in order to analyze the amplification curves.
There is software to scan files .sds (Applied Biosystems qPCR device), but not files .eds (new file format exported by Viia7).
2 questions:
Does anyone know a software for the analysis of a large number of files .eds (> 70 plates)?
If not, is it possible to convert .eds in .sds?

thank you
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Postby JackBean » Fri Jan 17, 2014 1:16 pm

I'm pretty sure the AB's software is able to work with several plates at once.
http://www.biolib.cz/en/main/

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Postby laurentPre » Fri Jan 17, 2014 2:55 pm

Thanks for your answer
We have the AB's software but we can't load more than 50 plates. If we load more the software shut down or lag. We need 15min to change only one parameter.
So we are looking for an other solution.
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Postby JackBean » Fri Jan 17, 2014 3:01 pm

I see. The question is, whether that is due to the program or the computer. If the program works, slowly, but works, the problem is probably rather with the computer and not with limitations of the program.
(which doesn't mean that other program could work better and faster)
http://www.biolib.cz/en/main/

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Postby laurentPre » Mon Jan 20, 2014 9:30 am

We asked to AB for the capacity of the computer. We bought a omputer stronger than what is required. Whe have 8G of RAM just for this.
and the soft still too slow.
So we are looking for an alternative.

Thank you.
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