Join for Free!
121578 members

Consensus sequence in Bioedit via CLUSTALW

Everything on bioinformatics, the science of information technology as applied to biological research.

Moderator: BioTeam

Consensus sequence in Bioedit via CLUSTALW

Postby vl80 » Wed Oct 31, 2012 2:55 am

Hello, I am aligning about 100 sequences in order to identify some primer targets for a long range PCR. I used the CLUSTALW interfaced via Bioedit. In order to identify the primers, I need a consesnsus sequence with degerate codes allowed. I can not find any option to get such a consensus sequence in the aligned areas.
Please let me know if this is possible and if so the pathway of doing it.
Thanks a lot
Posts: 2
Joined: Thu Oct 25, 2012 9:13 pm

Postby JackBean » Mon Nov 12, 2012 3:02 pm

In the Menu you have Alignment/Create consensus sequence; that should do it.

Cis or trans? That's what matters.
User avatar
Inland Taipan
Inland Taipan
Posts: 5694
Joined: Mon Sep 14, 2009 7:12 pm

Return to Bioinformatics

Who is online

Users browsing this forum: No registered users and 1 guest