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Transcriptome by organism

Everything on bioinformatics, the science of information technology as applied to biological research.

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Transcriptome by organism

Postby oldmanribo » Fri Mar 19, 2010 3:39 am

I'm looking to parse transcriptome files of E. coli K12 but can't find any strict transcriptome file formats. I'd use a genbank file but unfortunately the sub features of mRNA aren't defined for my purposes. Any insights on where I can track down the transcriptome of K12 without the hassle of fishing through other organisms?
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Postby JackBean » Sun Mar 21, 2010 9:52 am

look for some DNA chips, e.g. at PubMed, EMBL or Genevestigator
http://www.biolib.cz/en/main/

Cis or trans? That's what matters.
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