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PHP BLAST XML parser

Everything on bioinformatics, the science of information technology as applied to biological research.

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PHP BLAST XML parser

Postby ktsirig » Fri Oct 14, 2005 10:50 am

Hi all!
Has anyone ever seen or composed a parser for BLAST XML output in PHP?

Any hints on where to start?
Thanx!
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Postby bandit » Tue Feb 23, 2010 1:51 am

first ,you should download wwwblast from http://blast.NCBI.nlm.nih.gov

you can also find de method to use blast xml output in php
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Postby JackBean » Tue Feb 23, 2010 9:50 am

dosnload BLAST from NCBI? How to do that?
http://www.biolib.cz/en/main/

Cis or trans? That's what matters.
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Postby fcs » Wed Aug 11, 2010 4:11 am

You may not need to reinvent the wheel. I would first take a look at the BioPHP project:

http://www.biophp.org/

I have personally never used this but I have used BioPerl quite a bit and that can certainly parse BLAST output.
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