Bootstrap values for phylogentic trees

[microsat]

i have used NYSYS for constructing the phylogentic tree for my RAPD data. While using the same data for bootstrap analysis by Winboot, i could get the boot strap values of the variables only and not for the samples. Do anyone have experience in handling both the softwares?

[qqsvery]

Do you use Mega？Can you attach the pictures here，then I can see what`s wrong is it.