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protein / PDB file structureModerator: BioTeam
3 posts • Page 1 of 1
protein / PDB file structureHello,
I've been working on a project trying to measure rates of enzymatic reactions. I sometimes come accross PDB files that seem to have a very symmetrical shape. Are they just shaped this way, or was there a stereo/mirror/etc structure put alongside the original? http://www.pdb.org/pdb/explore.do?structureId=1DC4 I cant really find any others right now. Also, for RuBisCo: http://www.pdb.org/pdb/explore.do?structureId=1RXO Is that teh actual structure? It seems almost too-symmetrical. Thank you!
Re: protein / PDB file structureProtein complex may look symmetrical if it's composed of many same/similar subunits...according to numbers of those subunits it can be for example tetramer 4(haemoglobin)..hexamer(6) (connexons, or proteasome-like complex in E. coli HslV)..heptamer,octamer...etc.
Nuclear pore complex has some symmetry... Also many DNA binding proteins are dimers that bind to inverted repeats. Every man is a star whose light can make shadows dance differently and change our view of landscape permanently***
rubisco has something like 16 subunits, 8 identical big subunits and 8 identical small subunits. So yeah, i think it's very symmetrical.
"As a biologist, I firmly believe that when you're dead, you're dead. Except for what you live behind in history. That's the only afterlife" - J. Craig Venter
3 posts • Page 1 of 1
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