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Plant growth stages are identified as distinct morphological landmarks in a continuous …

Biology Articles » Botany » Whole-Plant Growth Stage Ontology for Angiosperms and Its Application in Plant Biology » Literature cited

Literature cited
- Whole-Plant Growth Stage Ontology for Angiosperms and Its Application in Plant Biology


Ashikari M, Wu J, Yano M, Sasaki T, Yoshimura A (1999) Rice gibberellin-insensitive dwarf mutant gene Dwarf 1 encodes the alpha-subunit of GTP-binding protein. Proc Natl Acad Sci USA 96: 10284–10289

Bard JB, Rhee SY (2004) Ontologies in biology: design, applications and future challenges. Nat Rev Genet 5: 213–222

Boyes BC, Zayed AM, Ascenzi R, McCaskill AJ, Hoffman NE, Davis KR, Görlach J (2001) Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants. Plant Cell 13: 1499–1510

Chory J (1993) Out of darkness: mutants reveal pathways controlling light-regulated development in plants. Trends Genet 9: 167–172

Counce PA, Keisling TC, Mitchell AJ (2000) A uniform, objective, and adaptive system for expressing rice development. Crop Sci 40: 436–443

Cullis CA (2004) Plant Genomics and Proteomics. John Wiley & Sons, Hoboken, NJ

Davidson HE (2001) Genomic Regulatory Systems, Ed 1. Academic Press, San Diego

Doggett H (1988) Sorghum, Ed 2. John Wiley & Sons, New York

Fellbaum C (1998) WordNet: An Electronic Lexical Database. MIT Press, Cambridge, MA

Gopalacharyulu PV, Lindfors E, Bounsaythip C, Kivioja T, Yetukuri L, Hollmen J, Oresic M (2005) Data integration and visualization system for enabling conceptual biology. Bioinformatics (Suppl 1) 21: i177–i185

Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, et al (2004) The gene ontology (GO) database and informatics resource. Nucleic Acids Res 32: D258–D261

Haun JR (1973) Visual quantification of wheat development. Agron J 65: 116–119

Hayama R, Coupland G (2004) The molecular basis of diversity in the photoperiodic flowering responses of Arabidopsis and rice. Plant Physiol 135: 677–684

Hayama R, Yokoi S, Tamaki S, Yano M, Shimamoto K (2003) Adaptation of photoperiodic control pathways produces short-day flowering in rice. Nature 422: 719–722

INGER (1996) Standard Evaluation System for RICE. International Rice Research Institute, Manila, Philippines, pp 1–52

Izawa T, Oikawa T, Tokutomi S, Okuno K, Shimamoto K (2000) Phytochromes confer the photoperiodic control of flowering in rice (a short-day plant). Plant J 22: 391–399

Izawa T, Takahashi Y, Yano M (2003) Comparative biology comes into bloom: genomic and genetic comparison of flowering pathways in rice and Arabidopsis. Curr Opin Plant Biol 6: 113–120

Jaiswal P, Avraham S, Ilic K, Kellogg EA, Pujar A, Reiser L, Seung RY, Sachs MM, Schaeffer M, Stein L, et al (2005) Plant ontology (PO): a controlled vocabulary of plant structures and growth stages. Comp Funct Genomics 6: 388–397

Jaiswal P, Ni J, Yap I, Ware D, Spooner W, Youens-Clark K, Ren L, Liang C, Zhao W, Ratnapu K, et al (2006) Gramene: a bird's eye view of cereal genomes. Nucleic Acids Res 34: D717–D723

Kardailsky I, Shukla VK, Ahn JH, Dagenais N, Christensen SK, Nguyen JT, Chory J, Harrison MJ, Weigel D (1999) Activation tagging of the floral inducer FT. Science 286: 1962–1965

Kobayashi Y, Kaya H, Goto K, Iwabuchi M, Araki T (1999) A pair of related genes with antagonistic roles in mediating flowering signals. Science 286: 1960–1962

Kojima S, Takahashi Y, Kobayashi Y, Monna L, Sasaki T, Araki T, Yano M (2002) Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions. Plant Cell Physiol 43: 1096–1105

Lawrence CJ, Seigfried TE, Brendel V (2005) The maize genetics and genomics database: the community resource for access to diverse maize data. Plant Physiol 138: 55–58

Malcomber ST, Preston JC, Reinheimer R, Kossuth J, Kellogg EA (2006) Developmental gene evolution and the origin of grass inflorescence diversity. Adv Bot Res 44: 423–479

McMaster GS, Wilhelm WW, Frank AB (2005) Developmental sequences for simulating crop phenology for water-limiting conditions. Aust J Agric Res 56: 1277–1288

Meier U (1997) Growth Stages of Mono- and Dicotyledonous Plants (Biologische Bundesanstalt, Bundessortenamt und Chemische Industrie [BBCH]-Monograph). Blackwell Wissenschafts-Verlag, Berlin

OBO (2005) Open Biological Ontologies. http://obo.sourceforge.net/ (June 1, 2006)

Padilla JM, Otegui ME (2005) Co-ordination between leaf initiation and leaf appearance in field-grown maize (Zea mays): genotypic differences in response of rates to temperature. Ann Bot (Lond) 96: 997–1007

Putterill J, Laurie R, Macknight R (2004) It's time to flower: the genetic control of flowering time. Bioessays 26: 363–373

Putterill J, Robson F, Lee K, Simon R, Coupland G (1995) The CONSTANS gene of Arabidopsis promotes flowering and encodes a protein showing similarities to zinc finger transcription factors. Cell 80: 847–857

Rhee SY, Beavis W, Berardini TZ, Chen G, Dixon D, Doyle A, Garcia-Hernandez M, Huala E, Lander G, Montoya M, et al (2003) The Arabidopsis information resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res 31: 224–228

Ritchie SW, Hanway JJ, Benson GO (1993) How a Corn Plant Develops. CES Special Report No. 48. Iowa State University, Ames, IA, p 21

Samach A, Onouchi H, Gold SE, Ditta GS, Schwarz-Sommer Z, Yanofsky MF, Coupland G (2000) Distinct roles of CONSTANS target genes in reproductive development of Arabidopsis. Science 288: 1613–1616

Schnable PS, Hochholdinger F, Nakazono M (2004) Global expression profiling applied to plant development. Curr Opin Plant Biol 7: 50–56

Searle I, Coupland G (2004) Induction of flowering by seasonal changes in photoperiod. EMBO J 23: 1217–1222

Smith B (2004) Beyond Concepts: Ontology as Reality Representation. In AVaL Vieu, ed, International Conference on Formal Ontology and Information Systems. Proceedings of FOIS 2004, Turin, Italy

Stein L (2001) Genome annotation: from sequence to biology. Nat Rev Genet 2: 493–503

Yamamuro C, Ihara Y, Wu X, Noguchi T, Fujioka S, Takatsuto S, Ashikari M, Kitano H, Matsuoka M (2000) Loss of function of a rice brassinosteroid insensitive1 homolog prevents internode elongation and bending of the lamina joint. Plant Cell 12: 1591–1606

Yano M, Katayose Y, Ashikari M, Yamanouchi U, Monna L, Fuse T, Baba T, Yamamoto K, Umehara Y, Nagamura Y, et al (2000) Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell 12: 2473–2484

Yanovsky MJ, Kay SA (2002) Molecular basis of seasonal time measurement in Arabidopsis. Nature 419: 308–312

Yin X, Kropff MJ (1996) The effect of temperature on leaf appearance in rice. Ann Bot (Lond) 77: 215–221

Zadok JC, Chang TT, Konzak FC (1974) A decimal code for growth stages of cereals. Weed Res 14: 415–421

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