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AppleBreed DataBase (DB) aims to store genotypic and phenotypic data from multiple …


Biology Articles » Agriculture » Plant Production » A new versatile database created for geneticists and breeders to link molecular and phenotypic data in perennial crops: the AppleBreed DataBase » Table 2

Table 2
- A new versatile database created for geneticists and breeders to link molecular and phenotypic data in perennial crops: the AppleBreed DataBase

Table 2. Content and definition of the main tables corresponding to each super-class in AppleBreed DB
Super-classes Main classes Main tables Content

GENOTYPE PLANT MATERIAL GT_TREE Trees traced in the model
    GT_DNA_SAMPLE Information on DNA samples used in the model
  PASSPORT GT_ACCESSION Type of material (cultivar, breeding selection, segregating population, gene bank accession)and their names, including synonyms
    GT_PEDIGREE Parents of each accession, if known
  SYNONYMS GT_SYNONYM List of synonyms for each patronym
    GT_PATRONYM Patronym names with their literature references
PHENOTYPE DATA FRUIT QUALITY PH_INSTRUMENTAL_ANALYSIS Instrumental analysis made during the observation period
    PH_EXTERNAL ANALYSIS External analysis made duringthe observation period
    PH_SENSORIAL_ANALYSIS Sensorial analysis made during the observation period
    PH_EXPERT_PANEL Expert panel evaluation
    PH_SAMPLE Sampling of the fruit to facilitate the traceability of the information
  DISEASE RESISTANCE PH_DISEASE Information on diseases
    PH_DISEASE_ASSESSEMENT Observations made over several years
    PH_DISEASE_ORGAN Information on the plant organ evaluated
MOLECULAR DATA ALLELE MOL_ALLELE Allele information
  MARKERS MOL_MARKERS Markers used in the molecular analyses
  LOCUS MOL_LOCUS Locus names and other information about it
  LINKAGE GROUP MOL_LG Linkage group information: link between genotype, loci and allele
  MAPS MOL_MAPS Maps description
GROWTHSITE SITE GRO_SITE Sites used to locate the genotype
  TRIAL PLOT GRO_TRIAL_PLOT Trial plots used to locate the genotype
    GRO_TP_FERTILITY Soil fertility classes
    GRO_TP_DRAINAGE Soil drainage classes
    GRO_TP_ORGANIC_MATTER Soil organic matter classes
    GRO_TP_TEXTURE Soil texture classes
ORGANIZATION INSTITUTION ORG_INSTITUTIONS Institutions which supervised a growth
REFERENCES REFERENCES REF_REFERENCES Information on references used to describe the genotypes or the analysis methods

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