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AppleBreed DataBase (DB) aims to store genotypic and phenotypic data from multiple …


Biology Articles » Agriculture » Plant Production » A new versatile database created for geneticists and breeders to link molecular and phenotypic data in perennial crops: the AppleBreed DataBase » Table 1

Table 1
- A new versatile database created for geneticists and breeders to link molecular and phenotypic data in perennial crops: the AppleBreed DataBase

Table 1. Super-classes content in AppleBreed DB
Super-classes Acronym Content Main classes

GENOTYPE GT Information on the material that represents the genotype (tree, DNA sample), passport data of the genotype (accession, pedigree) and synonyms Plant material, passport, synonyms
PHENOTYPE DATA PH Fruit quality results (as external, sensorial, instrumental evaluations and expert panel results) and disease resistance evaluations Fruit quality, disease resistance
MOLECULAR DATA MOL Information on all results related to markers, linkage groups and allelic forms of the markers, and all necessary information for building maps with markers of a specific genotype. Marker information includes sizes of observed bands, PCR protocols, date and laboratory at which the data were raised primer sequences, and the gDNA or EST sequences from which the markers were derived. Allele Markers Locus Linkage group Maps
GROWTHSITE GRO Information on location of trees and orchards Site Trial plot
ORGANIZATION ORG Information about institutions supervising the site and the trial plot Institution
REFERENCES REF Information on literature references used to describe the genotypes and the evaluation procedure Reference

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