Login

Join for Free!
17232 members
table of contents table of contents

Biology Articles » Biogeography » The Trichoderma koningii aggregate species » References

References
- The Trichoderma koningii aggregate species

Arnold AE, Herre EA (2003). Canopy cover and leaf age affect colonization by tropical fungal endophytes: ecological pattern and process in Theobroma cacao (Malvaceae). Mycologia 95:388 –398

Bissett J (1991a). A revision of the genus Trichoderma. II. Infrageneric classification. Canadian Journal of Botany 60:2357 –2372.

Bissett J (1991b). A revision of the genus Trichoderma. III. Section Pachybasium. Canadian Journal of Botany 69:2372 –2417.

Bresadola J (1896). Fungi Brasilienses lecti a cl. Dr. Alfredo Möller. Hedwigia 35:276 –302.

Carbone I, Kohn LM (1999). A method for designing primer sets for speciation studies in filamentous Ascomycetes. Mycologia 91:553 –556

Chaverri P, Samuels GJ (2004). Hypocrea/Trichoderma (Ascomycota, Hypocreales, Hypocreaceae): Species with green ascospores. Studies in Mycology 48:1 –116.

Cooke MC (1879). New Zealand Fungi. Grevillea 8:54 –68.

Dodd SL, Lieckfeldt E, Chaverri P, Overton BE, Samuels GJ (2002). Taxonomy and phylogenetic relationships of two species of Hypocrea with Trichoderma anamorphs. Mycological Progress 1:409 –428

Dodd S, Lieckfeldt E, Samuels GJ (2003). Hypocrea atroviridis sp. nov., the teleomorph of Trichoderma atroviride.Mycologia 95:27 –40

Doi Y (1971). Some species of the genus Hypocrea. Bulletin of the National Science Museum, Tokyo 14:387 –400.

Doi Y (1972). Revision of the Hypocreales with cultural observations IV. The genus Hypocrea and its allies in Japan (2). Enumeration of the species. Bulletin of the National Science Museum Tokyo 15:649 –751.

Doi Y (1974). Hypocrea rufa (Pers. ex Fr.) Fr., Hypomyces aurantius (Pers. ex S.F. Gray) Tul., and their allies in Japan. Japanese Journal of Botany 20:403 –412.

Druzhinina I, Kopchinskiy A, Komon M, Bissett J, Szakács G, Kubicek CP (2005). An oligonucoeotide barcode for species identification in Trichoderma and Hypocrea. Fungal Genetics and Biology 42:813 –828

Druzhinina I, Kubicek CP (2005). Species concepts and biodiversity in Trichoderma and Hypocrea: from aggregate species to species clusters. Journal of the Zhejiang University of Science 6b:100 –112

Evans HC, Holmes KA, Thomas SE (2003). Endophytes and mycoparasites associated with an indigenous forest tree, Theobroma gileri, in Ecuador and a preliminary assessment of their potential as biocontrol agents of cocoa diseases. Mycological Progress 2:149 –160

Fisher MC, Koenig GL, White TJ, Taylor JW (2005). Molecular and phenotypic description of Coccidioides posadasii sp. nov., previously recognized as the non-California population of Coccidioides immitis. Mycologia 94:73 –84

Gams W, Bissett J (1998). Morphology and identification of Trichoderma. In: Trichoderma and Gliocladium. Vol. 1. Basic biology, taxonomy and genetics (Kubicek CP & Harman GE, eds.). Taylor & Francis, London:3 –34.

Gams W, Hoekstra ES, Aptroot A (eds) (1998). CBS course of mycology. 4th ed. Centraalbureau voor Schimmelcultures, Baarn, Delft.

Harrington TC, Rizzo DM (1999). Defining species in the fungi. In: Structure and dynamics of fungal populations (Worrall JJ, ed.). Kluwer Academic, Dordrecht:43 –71.

Hawksworth DL (2001). The magnitude of fungal diversity: the 1.5 million species estimate revisited. Mycological Research 105:1422 –1432

Holmes KA, Schroers H-J, Thomas SE, Evans HC, Samuels GJ (2004). Taxonomy and biocontrol potential of a new species of Trichoderma from the Amazon basin of South America. Mycological Progress 3:199 –210

Horne AS, Williamson HS (1923). The morphology and physiology of the genus Eidamia. Annals of Botany 37:393 –432.

Huelsenbeck JP, Ronquist F (2001). MrBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 755.

Jaklitsch WM, Komon M, Kubicek CP, Druzhinina I (2006a). Hypocrea voglmayrii sp. nov. from the Austrian Alps represents a new phylogenetic clade in Hypocrea / Trichoderma. Mycologia 98:1365 –1378.

Jaklitsch WM, Samuels GJ, Dodd SL, Lu B-S, Druzhinina IS (2006b). Hypocrea rufa/Trichoderma viride: a reassessment, and description of five closely related species with and without warted conidia. Studies in Mycology 56:135 –177

Komatsu M, Hashioka Y (1966). Trichoderma viride, as an antagonist of the wood-inhabiting Hymenomycetes, VI. Reports of the Tottori Mycological Institute (Japan) 5:1 –11.

Kopchinskiy A, Komon M, Kubicek CP, Druzhinina IS (2005). TrichoBLAST: a multiloci database for Trichoderma and Hypocrea identification. Mycological Research 109:657 –660.

Kornerup A, Wanscher JH (1978). Methuen Handbook of Colour. Third Edition, Sankt Jørgen Tryk, Copenhagen.

Kraus G, Druzhinina I, Bissett, J, Zafari D, Prillinger HJ, Szakács G, Zare R, Gams W, Kubicek CP (2004). Trichoderma brevicompactum sp. nov. Mycologia 96:1057 –1071.

Kubicek CP, Bissett J, Druzhinina I, Kullnig-Gradinger CM, Szakács G (2003). Genetic and metabolic diversity of Trichoderma: a case study on South-East Asian isolates. Fungal Genetics and Biology 38:310 –319

Kullnig-Gradinger CM, Szakács G, Kubicek CP (2002). Phylogeny and evolution of the genus Trichoderma: a multigene approach. Mycological Research 106:757 –767

Leache AD, Reeder TW (2002). Molecular systematics of the Eastern Fence Lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches. Systematic Biology 51:44 –68

Lieckfeldt E, Samuels GJ, Börner T, Gams W (1998). Trichoderma koningii: neotypification and Hypocrea teleomorph. Canadian Journal of Botany 76:1507 –1522

Lieckfeldt E, Samuels GJ, Nirenberg HI (1999). A morphological and molecular perspective of Trichoderma viride: is it one or two species? Applied and Environmental Microbiology 65:2418 –2428

Liu YJ, Whelen S, Hall BD (1999). Phylogenetic relationships among Ascomycetes: Evidence from an RNA polymerase II subunit. Molecular Biology and Evolution 16:1799 –1808

Lu BS, Druzhinina IS, Fallah P, Chaverri P, Gradinger C, Kubicek CP, Samuels GJ (2004). Hypocrea/Trichoderma species with pachybasium-like conidiophores: teleomorphs for T. minutisporum and T. polysporum, and their newly discovered relatives. Mycologia 96:310 –342

Lu BS, Samuels GJ (2003). Hypocrea stilbohypoxyli and its Trichoderma koningii-like anamorph: a new species from Puerto Rico on Stilbohypoxylon moelleri.Sydowia 55:255 –266.

Lübeck M, Bulat SA, Alekhina IA, Lieckfeldt E (2004). Delineation of species within the Trichoderma viride/atroviride/koningii complex by UP-PCR cross-blot hybridization. FEMS Microbiology Letters 237:255 –260

Nicholas KB, Nicholas HJ Jr (1997). Genedoc: a tool for editing and annotating multiple sequence alignments. www.psc.edu/biomed/genedoc.

Nirenberg HI (1976). Untersuchungen über die morphologische und biologische Differenzierung in der Fusarium-Sektion Liseola. Mitteilungen aus der Biologischen Bundesanstalt für Land- und Forstwirtschaft Berlin-Dahlem 169:i –v + 1–117.

O'Donnell K (2000). Molecular phylogeny of the Nectria haematococca-Fusarium solani species complex. Mycologia 92:919 –938

Oudemans CAJA, Koning CJ (1902). Prodrome d'une flore mycologique obtenue par la culture sur gélatine préparée de la terre humeuse du Spanderswoud, près de Bussum. Archives Néerlandaises des Sciences Exactes et Naturelles, Sér. 2, 7:266 –298.

Oyarbide F, Osterrieth ML, Cabello M (2001). Trichoderma koningii as a biomineralizing fungous agent of calcium oxalate crystals in typical Argiudolls of the Los Padres Lake natural reserve (Buenos Aires, Argentina). Microbiological Research 156:113 –119.

Rannala B, Yang Z (2005). Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. Journal of Molecular Evolution 43:304 –311.

Rifai MA (1969). A revision of the genus Trichoderma. Mycological Papers 116:1 –56.

Samuels GJ (2006). Trichoderma: Systematics, the sexual state, and ecology. Phytopathology 96:195 –206

Samuels GJ, Dodd SL, Gams W, Castlebury LA, Petrini O (2002). Trichoderma species associated with the green mold epidemic of commercially grown Agaricus bisporus.Mycologia 94:146 –170

Samuels GJ, Petrini O, Kuhls K, Lieckfeldt E, Kubicek CP (1998). The Hypocrea schweinitzii complex and Trichoderma sect. Longibrachiatum. Studies in Mycology 41:1 –54.

Sankaranarayanan C, Hussaini SS, Kumar PS, Prasad RD (1997). Nematicidal effect of fungal filtrates against root-knot nematodes. Journal of Biological Control 11:37 –41.

Slippers B, Fourie G, Crous PW, Coutinho TA, Wingfield BD, Wingfield MJ (2004). Multiple gene sequences delimit Botryosphaeria australis sp. nov. from B. lutea.Mycologia 96:1030 –1041

Song X-Y, Shen Q-T, Xie S-T, Chen X-L, Sun C-Y, Zhang Y-Z (2006). Broad-spectrum antimicrobial activity and high stability of trichokonins from Trichoderma koningii SMF2 against plant pathogens. FEMS Microbiology Letters 260:119 –125

Taylor JW, Jacobson DJ, Kroken S, Kasuga T, Geiser DM, Hibbett DS, Fisher MC (2000). Phylogenetic species recognition and species concepts in fungi. Fungal Genetics and Biology 31:21 –32

Thompson JD, Gibson TJ, Plewniak F, Jenmougin F, Higgins DG (1997). The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24:4876 –4882.

Volkmann-Kohlmeyer B, Kohlmeyer J (1996). How to prepare truly permanent microscope slides. Mycologist 10:107 –108.

Webster J (1964). Culture studies on Hypocrea and Trichoderma I. Comparison of perfect and imperfect states of H. gelatinosa, H. rufa and Hypocrea sp. 1. Transactions of the British Mycological Society 47:75 –96.

Wirsel SG, Runge-Frobose C, Ahren DG, Kemen E, Oliver RP, Mendgen KW (2002). Four or more species of Cladosporium sympatrically colonize Phragmites australis. Fungal Genetics and Biology 35:99 –113.

Worasatit N, Sivasithamparam K, Ghisalberti EL, Rowland C (1994). Variation in pyrone production, lytic enzymes and control of Rhizoctonia root rot of wheat among single-spore isolates of Trichoderma koningii. Mycological Research 98:1357 –1363.


rating: 0.00 from 0 votes | updated on: 29 Nov 2007 | views: 1501 |

Rate article:







excellent!bad…