Login

Join for Free!
112476 members
table of contents table of contents

In this study, the authors describe their attempt to engineer a mouse …


Biology Articles » Chronobiology » System-Driven and Oscillator-Dependent Circadian Transcription in Mice with a Conditionally Active Liver Clock » References

References
- System-Driven and Oscillator-Dependent Circadian Transcription in Mice with a Conditionally Active Liver Clock

  • Nagoshi E, Brown SA, Dibner C, Kornmann B, Schibler U. Circadian gene expression in cultured cells. Methods Enzymol. 2005;393:543–557. 
  • Yoo S-H, Yamazaki S, Lowrey PL, Shimomura K, Ko CH, et al. PERIOD2::LUCIFERASE real-time reporting of circadian dynamics reveals persistent circadian oscillations in mouse peripheral tissues. Proc Natl Acad Sci U S A. 2004;101:5339–5346. 
  • Welsh DK, Yoo SH, Liu AC, Takahashi JS, Kay SA. Bioluminescence imaging of individual fibroblasts reveals persistent, independently phased circadian rhythms of clock gene expression. Curr Biol. 2004;14:2289–2295. 
  • Hannibal J. Neurotransmitters of the retino-hypothalamic tract. Cell Tissue Res. 2002;309:73–88. 
  • Damiola F, Le Minh N, Preitner N, Kornmann B, Fleury-Olela F, et al. Restricted feeding uncouples circadian oscillators in peripheral tissues from the central pacemaker in the suprachiasmatic nucleus. Genes Dev. 2000;14:2950–2961.
  • Stokkan KA, Yamazaki S, Tei H, Sakaki Y, Menaker M. Entrainment of the circadian clock in the liver by feeding. Science. 2001;291:490–493.
  • Balsalobre A, Brown SA, Marcacci L, Tronche F, Kellendonk C, et al. Resetting of circadian time in peripheral tissues by glucocorticoid signaling. Science. 2000;289:2344–2347.
  • Brown SA, Zumbrunn G, Fleury-Olela F, Preitner N, Schibler U. Rhythms of mammalian body temperature can sustain peripheral circadian clocks. Curr Biol. 2002;12:1574–1583.
  • Le Minh N, Damiola F, Tronche F, Schutz G, Schibler U. Glucocorticoid hormones inhibit food-induced phase-shifting of peripheral circadian oscillators. EMBO J. 2001;20:7128–7136.
  • Albrecht U, Sun ZS, Eichele G, Lee CC. A differential response of two putative mammalian circadian regulators, mper1 and mper2, to light. Cell. 1997;91:1055–1064.
  • Spoelstra K, Albrecht U, van der Horst GT, Brauer V, Daan S. Phase responses to light pulses in mice lacking functional per or cry genes. J Biol Rhythms. 2004;19:518–529.
  • Reppert SM, Weaver DR. Coordination of circadian timing in mammals. Nature. 2002;418:935–941.
  • Sato TK, Yamada RG, Ukai H, Baggs JE, Miraglia LJ, et al. Feedback repression is required for mammalian circadian clock function. Nat Genet. 2006;38:312–319.
  • Debruyne JP, Noton E, Lambert CM, Maywood ES, Weaver DR, et al. A clock shock: Mouse CLOCK is not required for circadian oscillator function. Neuron. 2006;50:465–477.
  • Akashi M, Takumi T. The orphan nuclear receptor RORalpha regulates circadian transcription of the mammalian core-clock Bmal1. Nat Struct Mol Biol. 2005;12:441–448.
  • Preitner N, Damiola F, Lopez-Molina L, Zakany J, Duboule D, et al. The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator. Cell. 2002;110:251–260.
  • Triqueneaux G, Thenot S, Kakizawa T, Antoch MP, Safi R, et al. The orphan receptor Rev-erbalpha gene is a target of the circadian clock pacemaker. J Mol Endocrinol. 2004;33:585–608.
  • Lee C, Etchegaray JP, Cagampang FR, Loudon AS, Reppert SM. Posttranslational mechanisms regulate the mammalian circadian clock. Cell. 2001;107:855–867. 
  • Ripperger JA, Schibler U. Rhythmic CLOCK-BMAL1 binding to multiple E-box motifs drives circadian Dbp transcription and chromatin transitions. Nat Genet. 2006;38:369–374.
  • Eide EJ, Vielhaber EL, Hinz WA, Virshup DM. The circadian regulatory proteins BMAL1 and cryptochromes are substrates of casein kinase Iepsilon. J Biol Chem. 2002;277:17248–17254. 
  • Sanada K, Harada Y, Sakai M, Todo T, Fukada Y. Serine phosphorylation of mCRY1 and mCRY2 by mitogen-activated protein kinase. Genes Cells. 2004;9:697–708.
  • Bunger MK, Wilsbacher LD, Moran SM, Clendenin C, Radcliffe LA, et al. Mop3 Is an essential component of the master circadian pacemaker in mammals. Cell. 2000;103:1009–1017.
  • Akhtar RA, Reddy AB, Maywood ES, Clayton JD, King VM, et al. Circadian cycling of the mouse liver transcriptome, as revealed by cDNA microarray, is driven by the suprachiasmatic nucleus. Curr Biol. 2002;12:540–550.
  • Panda S, Antoch MP, Miller BH, Su AI, Schook AB, et al. Coordinated transcription of key pathways in the mouse by the circadian clock. Cell. 2002;109:307–320.
  • Storch K-F, Lipan O, Leykin I, Viswanathan N, Davis FC, et al. Extensive and divergent circadian gene expression in liver and heart. Nature. 2002;417:78–83.
  • Ueda HR, Chen W, Adachi A, Wakamatsu H, Hayashi S, et al. A transcription factor response element for gene expression during circadian night. Nature. 2002;418:534–539.
  • Kornmann B, Preitner N, Rifat D, Fleury-Olela F, Schibler U. Analysis of circadian liver gene expression by ADDER, a highly sensitive method for the display of differentially expressed mRNAs. Nucleic Acids Res. 2001;29:E51–51.
  • Kistner A, Gossen M, Zimmermann F, Jerecic J, Ullmer C, et al. Doxycycline-mediated quantitative and tissue-specific control of gene expression in transgenic mice. Proc Natl Acad Sci U S A. 1996;93:10933–10938.
  • Weibel ER, Staubli W, Gnagi HR, Hess FA. Correlated morphometric and biochemical studies on the liver cell. I. Morphometric model, stereologic methods, and normal morphometric data for rat liver. J Cell Biol. 1969;42:68–91.
  • Blouin A, Bolender RP, Weibel ER. Distribution of organelles and membranes between hepatocytes and nonhepatocytes in the rat liver parenchyma. A stereological study. J Cell Biol. 1977;72:441–455.
  • Nagoshi E, Saini C, Bauer C, Laroche T, Naef F, et al. Circadian gene expression in individual fibroblasts: Cell-autonomous and self-sustained oscillators pass time to daughter cells. Cell. 2004;119:693–705.
  • Nishiyama H, Xue JH, Sato T, Fukuyama H, Mizuno N, et al. Diurnal change of the cold-inducible RNA-binding protein (Cirp) expression in mouse brain. Biochem Biophys Res Commun. 1998;245:534–538.
  • Pirkkala L, Nykanen P, Sistonen L. Roles of the heat shock transcription factors in regulation of the heat shock response and beyond. FASEB J. 2001;15:1118–1131.
  • Morimoto RI. Regulation of the heat shock transcriptional response: Cross talk between a family of heat shock factors, molecular chaperones, and negative regulators. Genes Dev. 1998;12:3788–3796.
  • Trinklein ND, Murray JI, Hartman SJ, Botstein D, Myers RM. The role of heat shock transcription factor 1 in the genome-wide regulation of the mammalian heat shock response. Mol Biol Cell. 2004;15:1254–1261.
  • Zou J, Guo Y, Guettouche T, Smith DF, Voellmy R. Repression of heat shock transcription factor HSF1 activation by HSP90 (HSP90 complex) that forms a stress-sensitive complex with HSF1. Cell. 1998;94:471–480.
  • Morimoto RI, Kroeger PE, Cotto JJ. The transcriptional regulation of heat shock genes: A plethora of heat shock factors and regulatory conditions. EXS. 1996;77:139–163.
  • Holmberg CI, Hietakangas V, Mikhailov A, Rantanen JO, Kallio M, et al. Phosphorylation of serine 230 promotes inducible transcriptional activity of heat shock factor 1. EMBO J. 2001;20:3800–3810.
  • Weber F, Hung HC, Maurer C, Kay SA. Second messenger and Ras/MAPK signalling pathways regulate CLOCK/CYCLE-dependent transcription. J Neurochem. 2006;98:248–257.
  • Baggs JE, Green CB. Nocturnin, a deadenylase in Xenopus laevis retina: A mechanism for posttranscriptional control of circadian-related mRNA. Curr Biol. 2003;13:189–198.
  • Wang Y, Osterbur DL, Megaw PL, Tosini G, Fukuhara C, et al. Rhythmic expression of Nocturnin mRNA in multiple tissues of the mouse. BMC Dev Biol. 2001;1:9.
  • Nishiyama H, Itoh K, Kaneko Y, Kishishita M, Yoshida O, et al. A glycine-rich RNA-binding protein mediating cold-inducible suppression of mammalian cell growth. J Cell Biol. 1997;137:899–908.
  • Wellmann S, Buhrer C, Moderegger E, Zelmer A, Kirschner R, et al. Oxygen-regulated expression of the RNA-binding proteins RBM3 and CIRP by a HIF-1-independent mechanism. J Cell Sci. 2004;117:1785–1794.
  • Gachon F, Fonjallaz P, Damiola F, Gos P, Kodama T, et al. The loss of circadian PAR bZip transcription factors results in epilepsy. Genes Dev. 2004;18:1397–1412.
  • Sundgren-Andersson AK, Ostlund P, Bartfai T. Simultaneous measurement of brain and core temperature in the rat during fever, hyperthermia, hypothermia and sleep. Neuroimmunomodulation. 1998;5:241–247.
  • Nagy, A. Manipulating the mouse embryo: A laboratory manual. Cold Spring Harbor (New York): Cold Spring Harbor Laboratory Press; 2003. 764 p.
  • Fonjallaz P, Ossipow V, Wanner G, Schibler U. The two PAR leucine zipper proteins, TEF and DBP, display similar circadian and tissue-specific expression, but have different target promoter preferences. EMBO J. 1996;15:351–362.
  • Church GM, Gilbert W. Genomic sequencing. Proc Natl Acad Sci U S A. 1984;81:1991–1995.
  • Lavery DJ, Schibler U. Circadian transcription of the cholesterol 7 alpha hydroxylase gene may involve the liver-enriched bZIP protein DBP. Genes Dev. 1993;7:1871–1884.
  • Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics. 2003;19:185–193.
  • Wijnen H, Naef F, Young MW. Molecular and statistical tools for circadian transcript profiling. Methods Enzymol. 2005;393:341–365.
  • Ahdesmaki M, Lahdesmaki H, Pearson R, Huttunen H, Yli-Harja O. Robust detection of periodic time series measured from biological systems. BMC Bioinformatics. 2005;6:117.

rating: 9.00 from 5 votes | updated on: 21 Jun 2007 | views: 7650 |

Rate article:







excellent!bad…