Kaul S, Koo HL, Jenkins J, Rizzo M, Rooney T, Tallon LJ, Feldblyum T, Nierman W, Benito M-I, et al. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature (2000) 408:796–815
Goff SA, Ricke D, Lan T-H, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, et al. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science (2002) 296:92–100
Yu J, Hu S, Wang J, Wong GK-S, Li S, Liu B, Deng Y, Dai L, Zhou Y, et al. A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science (2002) 296:79–92
Schoof H, Zaccaria P, Gundlach H, Lemcke K, Rudd S, Kolesov G, Arnold R, Mewes HW, Mayer KFX. MIPS Arabidopsis thaliana database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome. Nucleic Acids Res (2002) 30:91–93
Rhee SY, Beavis W, Berardini TZ, Chen G, Dixon D, Doyle A, Garcia-Hernandez M, Huala E, Lander G, et al. The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res (2003) 31:224–228
Haas BJ, Wortman JR, Ronning CM, Hannick LI, Smith JRK, Maiti R, Chan AP, Yu C, Farzad M, et al. Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release. BMC Biol (2005) 3:7.
Tokimatsu T, Sakurai N, Suzuki H, Ohta H, Nishitani K, Koyama T, Umezawa T, Misawa N, Saito K, et al. KaPPA-View. A web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps. Plant Physiol (2005) 138:1289–1300.
Kurata N, Yamazaki Y. Oryzabase. An integrated biological and genome information database for rice. Plant Physiol (2006) 140:12–17.
Frisoa G, Giacomellia L, Ytterberga AJ, Peltiera J-B, Rudellaa A, Sunb Q, van Wijka KJ. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Plant Cell (2004) 16:478–499
Cui L, Veeraraghavan N, Richter A, Wall K, Jansen RK, Leebens-Mac J, Makalowska I, dePamphili CW. ChloroplastDB: the chloroplast genome database. Nucleic Acids Res (2006) 34:D692–D696
Heazlewood JL, Tonti-Filippini JS, Gout AM, Day DA, Whelan J, Millar AH. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Plant Cell (2004) 16:241–256
Shimaoka T, Ohnishi M, Sazuka T, Mitsuhashi N, Hara-Nishimura I, Shimazaki K-I, Maeshima M, Yokota A, Tomizawa K.-I, et al. Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Plant Cell Physiol (2004) 45:672–683.
Brown JWS, Shaw PJ, Shaw P, Marshall DF. Arabidopsis nucleolar protein database (AtNoPDB). Nucleic Acids Res (2005) 33:D633–D636.
Reumann S, Ma C, Lemke S, Babujee L. AraPerox. A database of putative Arabidopsis proteins from plant peroxisomes. Plant Physiol (2004) 136:2587–2608
Schlüter A, Fourcade S, Domènech-Estévez E, Gabaldón T, Huerta-Cepas J, Berthommier G, Ripp R, Wanders RJA, Poch O, et al. PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease. Nucleic Acids Res (2007) 35:D815–D822
Girke T, Lauricha J, Tran H, Keegstra K, Raikhel N. The cell wall navigator database. A systems-based approach to organism-unrestricted mining of protein families involved in cell wall metabolism. Plant Physiol (2004) 136:3003–3008
Cutler SR, Ehrhardt DW, Griffitts JS, Somerville CR. Randam GFP::cDNA fusions enable visualization of subcellular structures in cells of Arabidopsis at a high frequency. Proc. Natl Acad. Sci. USA (2000) 97:3718–3723
Koroleva OA, Tomlinson ML, Leader D, Shaw P, Doonan JH. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Plant J (2004) 41:162–174
Li S, Ehrhardt DW, Rhee SY. Systematic analysis of Arabidopsis organelles and a protein localization database for facilitating fluorescent tagging of full-length. Arabidopsis proteins. Plant Physiol (2006) 141:527–539.
Heazlewood JL, Verboom RE, Tonti-Filippini J, Small I, Millar AH. SUBA: the Arabidopsis subcellular database. Nucleic Acids Res (2007) 35:D213–D218.
Fink JL, Aturaliya RN, Davis MJ, Zhang F, Hanson K, Teasdale MS, Kai C, Kawai J, Carninci P, et al. LOCATE: a mouse protein subcellular localization database. Nucleic Acids Res (2006) 34:D213–D217.
Nash R, Weng S, Hitz B, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, et al. Expanded protein information at SGD: new pages and proteome browser. Nucleic Acids Res (2007) 35:D468–D471
Pierleoni A, Martelli PL, Fariselli P, Casadio R. eSLDB: eukaryotic subcellular localization database. Nucleic Acids Res (2007) 35:D208–D212.
Wiwatwattana N, Landau CM, Cope GJ, Harp GA, Kumar A. Organelle DB: an updated resource of eukaryotic protein localization and function. Nucleic Acids Res (2007) 35:D810–D814.
Kumagai-Sano F, Hayashi T, Sano T, Hasezawa S. Cell cycle synchronization of tobacco BY-2 cells. Nat. Protocol (2006) 1:2621–2627.
Oikawa K, Kasahara M, Kiyosue T, Kagawa T, Suetsugu N, Takahashi F, Kanegae T, Niwa Y, Kadota A, et al. CHLOROPLAST UNUSUAL POSITIONING1 is essential for proper chloroplast positioning. Plant Cell (2003) 15:2805–2815
Wada M, Kagawa T, Sano Y. Chloroplast movement. Annu. Rev. Plant Biol (2003) 54:455–468.
Hayashi Y, Yamada K, Shimada T, Matsushima R, Nishizawa NK, Nishimura M, Hara-Nishimura I. A proteinase-storing body that prepares for cell death or stresses in the epidermal cells of Arabidopsis. Plant Cell Physiol (2001) 42:894–899
Gunning BES. The identity of mystery organelles in Arabidopsis plants expressing GFP. Trends Plant Sci (1998) 3:417