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A report on the results of phylogenetic analyses of the endemic African …


Biology Articles » Biogeography » Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences, with a new tribal classification of the subfamily » Table 3

Table 3
- Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences, with a new tribal classification of the subfamily

List of the taxa examined in this study and their GenBank accession numbers.

Famille
Taxa
cyt b
IRBP
GHR

Murinae
Aethomys chrysophilus
AJ604515
AY326075
NA
  Apodemus argenteus
AB032848
AB032855
NA
  Apodemus flavicollis
AB032853
AB032860
AM910943*
  Apodemus mystacinus
AF159394
AJ311158
AM910942*
  Apodemus speciosus
AB032849
AB032856
NA
  Apodemus sylvaticus
AB033695
AB032863
NA
  Apomys hylocoetes
AY324467
NA
AY294915
  Archboldomys luzonensi
AY324460
DQ191495
NA
  Arvicanthis niloticus
AF004569
DQ022386*
AM910944*
  Arvicanthis somalicus
AF004573
NA
AY294918
  Bandicota bengalensis
AM408340
AM408331
AM910945*
  Batomys granti
AY324459
DQ191496
AY294917
  Berylmys bowersii
AM408337
AM407896
AM910946*
  Bunomys chrysocomus
AM910934*
AM910937*
AM910947*
  Chrotomys gonzalensi
AY324461
DQ191503
NA
  Colomys goslingi
AF518372
DQ022395 *
AM910948*
  Conilurus penicilatus
AM910935*
AM910938*
AM910949*
  Cremnomys cutchicus
DQ022381
DQ022384
NA
  Dasymys incomtus
AF141217
EU292143*
AM910950*
  Desmomys harringtoni
AF141206
EU292144*
NA
  Diplothrix legata
AB033696
AB033706
NA
  Golunda ellioti
AM408338
AM408332
AM910951*
  Grammomys macmillani
AM408345
AM408329
AM910980*
  Grammomys sp.
AF141218
DQ022389
AM910952*
  Heimyscus fumosus
AF518333
DQ022397*
AM910953*
  Hybomys univittatus
AF141219
DQ022388*
DQ019059
  Hydromys chrysogaster
AM408339
AM408319
AM910954*
  Hylomyscus parvus
AF518330
DQ022399
DQ019060
  Hylomyscus stella
AF518331
AM408320
AM910955*
  Lemniscomys striatus
AF141210
AM408321
AM910956*
  Leopoldamys edwardsi
AJ698881
AJ698897
NA
  Malacomys edwardsi
DQ022379
DQ022392*
AM910958*
  Malacomys longipes
AM408341
DQ022393*
AM910957*
  Mastomys erythroleucus
AF518338
AM408335
AM910959*
  Mastomys natalensis
AF518342
AY518342
NA
  Mastomys pernanus
AF518343
DQ022403*
AM910960*
  Mastomys kollmannspergeri
AF518345
DQ022402*
AM910961*
  Maxomys whiteheadi
EU292150*
AY326094
NA
  Micaelamys namaquensis
AF141215
AM408330
AY294914
  Micromys minutus
AB033697
AB033710
NA
  Millardia kathleenae
EU292148*
EU292145*
AM910963*
  Millardia meltada
AF141221
AM408322
AM910962*
  Mus (Coelomys) crociduroides
AJ698878
AJ698894
AM910964*
  Mus (Nannomys) minutoides
AY057816
AJ875086
NA
  Mus (Mus) musculus
V00711
AB033711
AY271378
  Mus (Pyromys) platythrix
AJ698880
AJ698895
NA
  Mylomys dybowski
AF141212
EU292146*
AM910965*
  Myomyscus brockmani
AF518353
DQ022407*
AM910966*
  Myomyscus verreauxii
AF518355
DQ022408*
AM910967*
  Myomyscus yemeni
AF518357
DQ022409*
AM910968*
  Niviventer niviventer
AM408344
AM408323
AM910969*
  Oenomys hypoxanthus
AM408342
AM408324
AM910970*
  Otomys angoniensis
AM408343
AM408325
AM910971*
  Parotomys sp.
NA
NA
AY294912
  Pelomys fallax
DQ022382
DQ022391
NA
  Phloeomys cumingi
DQ191484
AY326103
DQ019076
  Praomys daltoni
AF518349
DQ022406*
AM910972*
  Praomys degraaffi
AF518359
DQ022410
NA
  Praomys jacksoni
AF518361
AM408326
AM910973*
  Praomys misonnei
AF518364
DQ022412
NA
  Praomys tullbergi
AF518365
AM408327
AM910974*
  Praomys verschureni
AF518373
DQ022394*
NA
  Pseudomys australis
AM910936*
AM910939*
AM910975*
  Rattus exulans
DQ191486
AY326105
DQ019074
  Rattus norvegicus
VO1556
AB033714
J04811
  Rattus rattus
AB033702
AM408328
AM910976*
  Rattus tanezumi
AB096841
AB096856
NA
  Rhabdomys pumilio
AF141214
AY326106
AY294913
  Rhynchomys isarogensis
AY324462
AY326108
DQ019075
  Stenocephalemys albipes
AF518347
DQ022404
AM910977*
  Stenocephalemys albocaudata
AF518370
DQ022414*
AM910978*
  Stochomys longicaudatus
EU292149*
EU292147*
DQ019076
  Sundamys muelleri
AM408340
AY326111
AM910979*
  Tokudaia osimensis
AB029429
AB033712
AM910981*
  Zelotomys hildegardeae
AF518375
DQ022396*
DQ019080

Deomyinae
Acomys
AJ233953 (cahirinus)
AJ698898 (cahirinus)
AY294923 (ignitus)
  Deomys ferrugineus
NA
AY326084
AY294922
  Lophuromys flavopunctatus
AY828236
AY326091
AY294921

Gerbillinae
Desmodillus auricularis
AJ851272
AM910940*
DQ019048
  Gerbillurus paeba
AJ430557
AM910941*
NA
  Gerbillus gerbillus
AJ851269
NA
DQ019049
  Meriones
AF159405 (unguiculatus)
AY326095 (unguiculatus)
AF332021 (shawi)
  Gerbilliscus robustus
AJ875234
AY326113
AY294920

*: newly acquired sequences. NA: sequence not available.


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