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A report on the results of phylogenetic analyses of the endemic African …


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Biology Articles » Biogeography » Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences, with a new tribal classification of the subfamily » Table 1

Table 1
- Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences, with a new tribal classification of the subfamily

Best model and estimated substitution parameter values.

Gene
 Cytochrome b
 IRBP
 GHR
 Combined data
Length (bp)
 1140
 1233
 931
 3304
Best model
 GTR+G+I
 TVM+G+I
 TVM+G+I
 GTR+G+I
πA
 0.424
 0.231
 0.308
 0.318
πC
 0.324
 0.278
 0.252
 0.287
πG
 0.029
 0.267
 0.198
 0.180
πT
 0.223
 0.224
 0.242
 0.215
rA-C
 0.036
 1.321
 1.011
 1.867
rA-G
 3.821
 6.415
 5.880
 4.316
rA-T
 0.210
 0.931
 0.836
 3.101
rC-G
 0.251
 0.621
 1.376
 0.632
rC-T
 5.453
 6.415
 5.880
 29.243
rG-T
 1.000
 1.000
 1.000
 1.000
α
 0.475
 0.918
 0.640
 0.290
Pinv
 0.410
 0.281
 0.059
 0.215

These values were estimated from maximum-likelihood analysis of each gene separately (cytochrome b, IRBP, and GHR, respectively) and of the combined data set.


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