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- Phage-Host Interaction: an Ecological Perspective


  1.  Ashelford, K. E., M. J. Day, and J. C. Fry. 2003. Elevated abundance of bacteriophage infecting bacteria in soil. Appl. Environ. Microbiol. 69:285-289.
  2. Ashelford, K. E., J. C. Fry, M. J. Bailey, A. R. Jeffries, and M. J. Day. 1999. Characterization of six bacteriophages of Serratia liquefaciens CP6 isolated from the sugar beet phytosphere. Appl. Environ. Microbiol. 65:1959-1965.
  3. Barondess, J. J., and J. Beckwith. 1990. A bacterial virulence determinant encoded by lysogenic coliphage lambda. Nature 346:871-874.
  4. Beres, S. B., G. L. Sylva, K. D. Barbian, B. Lei, J. S. Hoff, N. D. Mammarella, M. Y. Liu, J. C. Smoot, S. F. Porcella, L. D. Parkins, D. S. Campbell, T. M. Smith, J. K. McCormick, D. Y. Leung, P. M. Schlievert, and J. M. Musser. 2002. Genome sequence of a serotype M3 strain of group A Streptococcus: phage-encoded toxins, the high-virulence phenotype, and clone emergence. Proc. Natl. Acad. Sci. USA 99:10078-10083.
  5. Bergh, O., K. Y. Borsheim, G. Bratbak, and M. Heldal. 1989. High abundance of viruses found in aquatic environments. Nature 340:467-468.
  6. Bouchard, J. D., and S. Moineau. 2000. Homologous recombination between a lactococcal bacteriophage and the chromosome of its host strain. Virology 270:65-75.
  7. Boyd, E. F., and H. Brussow. 2002. Common themes among bacteriophage-encoded virulence factors and diversity among the bacteriophages involved. Trends Microbiol. 10:521-529.
  8. Bratbak, G., M. Heldal, T. F. Thingstad, and P. Tuomi. 1996. Dynamics of virus abundance in coastal seawater. FEMS Microbiol. Ecol. 19:263-269.
  9. Breitbart, M., I. Hewson, B. Felts, J. M. Mahaffy, J. Nulton, P. Salamon, and F. Rohwer. 2003. Metagenomic analyses of an uncultured viral community from human feces. J. Bacteriol. 185:6220-6223.
  10. Breitbart, M., P. Salamon, B. Andresen, J. M. Mahaffy, A. M. Segall, D. Mead, F. Azam, and F. Rohwer. 2002. Genomic analysis of uncultured marine viral communities. Proc. Natl. Acad. Sci. USA 99:14250-14255.
  11. Broudy, T. B., and V. A. Fischetti. 2003. In vivo lysogenic conversion of ToxStreptococcus pyogenes to Tox+ with lysogenic streptococci or free phage. Infect. Immun. 71:3782-3786.
  12. Broudy, T. B., V. Pancholi, and V. A. Fischetti. 2001. Induction of lysogenic bacteriophage and phage-associated toxin from group A streptococci during coculture with human pharyngeal cells. Infect. Immun. 69:1440-1443.
  13. Broudy, T. B., V. Pancholi, and V. A. Fischetti. 2002. The in vitro interaction of Streptococcus pyogenes with human pharyngeal cells induces a phage-encoded extracellular DNase. Infect. Immun. 70:2805-2811.
  14. Bruttin, A., F. Desiere, N. d'Amico, J. P. Guerin, J. Sidoti, B. Huni, S. Lucchini, and H. Brussow. 1997. Molecular ecology of Streptococcus thermophilus bacteriophage infections in a cheese factory. Appl. Environ. Microbiol. 63:3144-3150.
  15. Burroughs, N. J., P. Marsh, and E. M. Wellington. 2000. Mathematical analysis of growth and interaction dynamics of streptomycetes and a bacteriophage in soil. Appl. Environ. Microbiol. 66:3868-3877.
  16. Bushman, F. 2002. Lateral DNA transfer. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
  17. Canchaya, C., C. Proux, G. Fournous, A. Bruttin, and H. Brussow. 2003. Prophage genomics. Microbiol. Mol. Biol. Rev. 67:238-276.
  18. Chen, F., and J. Lu. 2002. Genomic sequence and evolution of marine cyanophage P60: a new insight on lytic and lysogenic phages. Appl. Environ. Microbiol. 68:2589-2594.
  19. Chibani-Chennoufi, S., J. Sidoti, A. Bruttin, E. Kutter, S. A. Sarker, and H. Brussow. 2004. Comparison of in vitro and in vivo bacteriolytic activity of Escherichia coli phages: implication for phage therapy. Antimicrob. Agents Chemother.
  20. Cochran, P. K., and J. H. Paul. 1998. Seasonal abundance of lysogenic bacteria in a subtropical estuary. Appl. Environ. Microbiol. 64:2308-2312..
  21. Danovaro, R., E. Manini, and A. Dell'Anno. 2002. Higher abundance of bacteria than of viruses in deep Mediterranean sediments. Appl. Environ. Microbiol. 68:1468-1472.
  22. Dozois, C. M., F. Daigle, and R. Curtiss III. 2003. Identification of pathogen-specific and conserved genes expressed in vivo by an avian pathogenic Escherichia coli strain. Proc. Natl. Acad. Sci. USA 100:247-252.
  23. Duplessis, M., and S. Moineau. 2001. Identification of a genetic determinant responsible for host specificity in Streptococcus thermophilus bacteriophages. Mol. Microbiol. 41:325-336.
  24. Durmaz, E., and T. R. Klaenhammer. 2000. Genetic analysis of chromosomal regions of Lactococcus lactis acquired by recombinant lytic phages. Appl. Environ. Microbiol. 66:895-903.
  25. Edlin, G., L. Lin, and R. Kudrna. 1975. Lambda lysogens of E. coli reproduce more rapidly than non-lysogens. Nature 255:735-737.
  26. Faruque, S. M., M. M. Rahman, Asadulghani, K. M. Nasirul Islam, and J. J. Mekalanos. 1999. Lysogenic conversion of environmental Vibrio mimicus strains by CTX{Phi}. Infect. Immun. 67:5723-5729.
  27. Fuhrman, J. A. 1999. Marine viruses and their biogeochemical and ecological effects. Nature 399:541-548.
  28. Furuse, K. 1987. Distribution of coliphages in the general environment: general considerations, p. 87-124. In S. M. Goyal, C. Gerba, and G. Bitton (ed.), Phage ecology. John Wiley & Sons, New York, N.Y.
  29. Gamage, S. D., J. E. Strasser, C. L. Chalk, and A. A. Weiss. 2003. Nonpathogenic Escherichia coli can contribute to the production of Shiga toxin. Infect. Immun. 71:3107-3115.
  30. Goode, D., V. M. Allen, and P. A. Barrow. 2003. Reduction of experimental Salmonella and Campylobacter contamination of chicken skin by application of lytic bacteriophages. Appl. Environ. Microbiol. 69:5032-5036.
  31. Haggard-Ljungquist, E., C. Halling, and R. Calendar. 1992. DNA sequences of the tail fiber genes of bacteriophage P2: evidence for horizontal transfer of tail fiber genes among unrelated bacteriophages. J. Bacteriol. 174:1462-1477.
  32. Hennes, K. P., and M. Simon. 1995. Significance of bacteriophages for controlling bacterioplankton growth in a mesotrophic lake. Appl. Environ. Microbiol. 61:333-340.
  33. Hennes, K. P., C. A. Suttle, and A. M. Chan. 1995. Fluorescently labeled virus probes show that natural virus populations can control the structure of marine microbial communities. Appl. Environ. Microbiol. 61:3623-3627.
  34. Hill, C., L. A. Miller, and T. R. Klaenhammer. 1991. In vivo genetic exchange of a functional domain from a type II A methylase between lactococcal plasmid pTR2030 and a virulent bacteriophage. J. Bacteriol. 173:4363-4370.
  35. Jiang, S. C., and J. H. Paul. 1997. Significance of lysogeny in the marine environment: studies with isolates and a model of lysogenic phage production. Microb. Ecol. 35:235-243.
  36. Kilic, A. O., S. I. Pavlova, S. Alpay, S. S. Kilic, and L. Tao. 2001. Comparative study of vaginal Lactobacillus phages isolated from women in the United States and Turkey: prevalence, morphology, host range, and DNA homology. Clin. Diagn. Lab. Immunol. 8:31-39.
  37. Krogfelt, K. A., L. K. Poulsen, and S. Molin. 1993. Identification of coccoid Escherichia coli BJ4 cells in the large intestine of streptomycin-treated mice. Infect. Immun. 61:5029-5034.
  38. Kudva, I. T., S. Jelacic, P. I. Tarr, P. Youderian, and C. J. Hovde. 1999. Biocontrol of Escherichia coli O157 with O157-specific bacteriophages. Appl. Environ. Microbiol. 65:3767-3773.
  39. Lin, L., R. Bitner, and G. Edlin. 1977. Increased reproductive fitness of Escherichia coli lambda lysogens. J. Virol. 21:554-559.
  40. Liu, M., R. Deora, S. R. Doulatov, M. Gingery, F. A. Eiserling, A. Preston, D. J. Maskell, R. W. Simons, P. A. Cotter, J. Parkhill, and J. F. Miller. 2002. Reverse transcriptase-mediated tropism switching in Bordetella bacteriophage. Science 295:2091-2094.
  41. Loessner, M. J., M. Rudolf, and S. Scherer. 1997. Evaluation of luciferase reporter bacteriophage A511::luxAB for detection of Listeria monocytogenes in contaminated foods. Appl. Environ. Microbiol. 63:2961-2965.
  42. Lu, Z., F. Breidt, V. Plengvidhya, and H. P. Fleming. 2003. Bacteriophage ecology in commercial sauerkraut fermentations. Appl. Environ. Microbiol. 69:3192-3202.
  43. Luke, K., A. Radek, X. Liu, J. Campbell, M. Uzan, R. Haselkorn, and Y. Kogan. 2002. Microarray analysis of gene expression during bacteriophage T4 infection. Virology 299:182-191.
  44. McDaniel, L., L. A. Houchin, S. J. Williamson, and J. H. Paul. 2002. Lysogeny in marine Synechococcus. Nature 415:496.
  45. McGrath, S., G. F. Fitzgerald, and D. van Sinderen. 2002. Identification and characterization of phage-resistance genes in temperate lactococcal bacteriophages. Mol. Microbiol. 43:509-520.
  46. Merrell, D. S., S. M. Butler, F. Qadri, N. A. Dolganov, A. Alam, M. B. Cohen, S. B. Calderwood, G. K. Schoolnik, and A. Camilli. 2002. Host-induced epidemic spread of the cholera bacterium. Nature 417:642-645.
  47. Moineau, S., S. Pandian, and T. R. Klaenhammer. 1993. Restriction/modification systems and restriction endonucleases are more effective on lactococcal bacteriophages that have emerged recently in the dairy industry. Appl. Environ. Microbiol. 59:197-202.
  48. Neve, H., U. Kemper, A. Geis, and K. J. Heller. 1994. Monitoring and characterization of lactococcal bacteriophage in a dairy plant. Kiel. Milchwirtsch. Forschungsber. 46:167-178.
  49. Ohnishi, M., J. Terajima, K. Kurokawa, K. Nakayama, T. Murata, K. Tamura, Y. Ogura, H. Watanabe, and T. Hayashi. 2002. Genomic diversity of enterohemorrhagic Escherichia coli O157 revealed by whole genome PCR scanning. Proc. Natl. Acad. Sci. USA 99:17043-17048.
  50. Pantucek, R., A. Rosypalova, J. Doskar, J. Kailerova, V. Ruzickova, P. Borecka, S. Snopkova, R. Horvath, F. Gotz, and S. Rosypal. 1998. The polyvalent staphylococcal phage phi 812: its host-range mutants and related phages. Virology 246:241-252.
  51. Pedulla, M. L., M. E. Ford, J. M. Houtz, T. Karthikeyan, C. Wadsworth, J. A. Lewis, D. Jacobs-Sera, J. Falbo, J. Gross, N. R. Pannunzio, W. Brucker, V. Kumar, J. Kandasamy, L. Keenan, S. Bardarov, J. Kriakov, J. G. Lawrence, W. R. Jacobs, Jr., R. W. Hendrix, and G. F. Hatfull. 2003. Origins of highly mosaic mycobacteriophage genomes. Cell 113:171-182.
  52. Poulsen, L. K., F. Lan, C. S. Kristensen, P. Hobolth, S. Molin, and K. A. Krogfelt. 1994. Spatial distribution of Escherichia coli in the mouse large intestine inferred from rRNA in situ hybridization. Infect. Immun. 62:5191-5194.
  53. Poulsen, L. K., T. R. Licht, C. Rang, K. A. Krogfelt, and S. Molin. 1995. Physiological state of Escherichia coli BJ4 growing in the large intestines of streptomycin-treated mice. J. Bacteriol. 177:5840-5845.
  54. Ritchie, J. M., P. L. Wagner, D. W. Acheson, and M. K. Waldor. 2003. Comparison of Shiga toxin production by hemolytic-uremic syndrome-associated and bovine-associated Shiga toxin-producing Escherichia coli isolates. Appl. Environ. Microbiol. 69:1059-1066.
  55. Schmidt, H., M. Bielaszewska, and H. Karch. 1999. Transduction of enteric Escherichia coli isolates with a derivative of Shiga toxin 2-encoding bacteriophage {Phi}3538 isolated from Escherichia coli O157:H7. Appl. Environ. Microbiol. 65:3855-3861.
  56. Scholl, D., S. Rogers, S. Adhya, and C. R. Merril. 2001. Bacteriophage K1-5 encodes two different tail fiber proteins, allowing it to infect and replicate on both K1 and K5 strains of Escherichia coli. J. Virol. 75:2509-2515.
  57. Schrader, H. S., J. O. Schrader, J. J. Walker, T. A. Wolf, K. W. Nickerson, and T. A. Kokjohn. 1997. Bacteriophage infection and multiplication occur in Pseudomonas aeruginosa starved for 5 years. Can. J. Microbiol. 43:1157-1163.
  58. Shaikh, N., and P. I. Tarr. 2003. Escherichia coli O157:H7 Shiga toxin-encoding bacteriophages: integrations, excisions, truncations, and evolutionary implications. J. Bacteriol. 185:3596-3605.
  59. Sulakvelidze, A., Z. Alavidze, and J. G. Morris, Jr. 2001. Bacteriophage therapy. Antimicrob. Agents Chemother. 45:649-659.
  60. Sullivan, M. B., J. B. Waterbury, and S. W. Chisholm. 2003. Cyanophages infecting the oceanic cyanobacterium Prochlorococcus. Nature 424:1047-1051.
  61. Suttle, C. A. 1994. The significance of viruses to mortality in aquatic microbial communities. Microb. Ecol. 28:237-243.
  62. Suttle, C. A., and A. M. Chan. 1994. Dynamics and distribution of cyanophages and their effect on marine Synechococcus spp. Appl. Environ. Microbiol. 60:3167-3174.
  63. Ventura, M., C. Canchaya, M. Kleerebezem, W. M. de Vos, R. J. Siezen, and H. Brussow. 2003. The prophage sequences of Lactobacilllus plantarum strain WCFS1. Virology 316:245-255.
  64. Wagner, P. L., J. Livny, M. N. Neely, D. W. Acheson, D. I. Friedman, and M. K. Waldor. 2002. Bacteriophage control of Shiga toxin 1 production and release by Escherichia coli. Mol. Microbiol. 44:957-970.
  65. Waterbury, J. B., and F. W. Valois. 1993. Resistance to co-occurring phages enables marine Synechococcus communities to coexist with cyanophages abundant in seawater. Appl. Environ. Microbiol. 59:3393-3399.
  66. Weinbauer, M. G., and M. G. Hofle. 1998. Size-specific mortality of lake bacterioplankton by natural virus communities. Aquat. Microb. Ecol. 15:103-113.
  67. Wiggins, B. A., and M. Alexander. 1985. Minimum bacterial density for bacteriophage replication: implications for significance of bacteriophages in natural ecosystems. Appl. Environ. Microbiol. 49:19-23.
  68. Wommack, K. E., and R. R. Colwell. 2000. Virioplankton: viruses in aquatic ecosystems. Microbiol. Mol. Biol. Rev. 64:69-114.
  69. Wommack, K. E., R. T. Hill, T. A. Muller, and R. R. Colwell. 1996. Effects of sunlight on bacteriophage viability and structure. Appl. Environ. Microbiol. 62:1336-1341.
  70. Wommack, K. E., J. Ravel, R. T. Hill, and R. R. Colwell. 1999. Hybridization analysis of Chesapeake Bay virioplankton. Appl. Environ. Microbiol. 65:241-250.
  71. Woods, D. R. 1976. Bacteriophage growth on stationary phase Achromobacter cells. J. Gen. Virol. 32:45-50.
  72. Zhong, Y., F. Chen, S. W. Wilhelm, L. Poorvin, and R. E. Hodson. 2002. Phylogenetic diversity of marine cyanophage isolates and natural virus communities as revealed by sequences of viral capsid assembly protein gene g20. Appl. Environ. Microbiol. 68:1576-1584.

Source: Journal of Bacteriology, 2004

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