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Biology Articles » Biogeography » Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences » Table 4
Table 4
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Test of alternative phylogenetic hypotheses for continental cichlid groups |
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| Topological constraint |
pKH |
pSH |
2 ln Bayes factor |
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| Best as in Fig. 1 |
1.000 |
1.000 |
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| Constraint 1: monophyly of Madagascar and Indo/Sri Lanka (Tree 1) |
0.006** |
0.043* |
65.4* |
| Constraint 2: monophyly of Africa, Madagascar and Indo/Sri Lanka (Tree 2) |
0.001** |
0.002** |
125.1* |
| Constraint 3: monophyly of Africa and Indo/Sri Lanka (Tree 3) |
0.000** |
0.000** |
297.2* |
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Probabilities for constrained trees were assessed using the Kishino-Hasegawa (pKH) and Shimodaira-Hasegawa (pSH) tests and the Bayes factor. Single asterisks indicate significant rejection (p < 0.05) and double asterisks indicate highly significant rejection (p < 0.01) of the corresponding hypothesis. We used the traditional criterion of 2 ln Bayes factor over 10 (with an asterisk), indicating very strong evidence against an alternative hypothesis [39]. Constrained trees are the following: Tree 1: ((((Oreochromis sp., (Tropheus duboisi, Neolamprologus brichardi)), Tylochromis polylepis),(Astronotus ocellatus, Hypselecara temporalis)),((Etroplus maculatus, Paretroplus maculatus),(Ptychochromoides katria, Paratilapia polleni))); Tree 2: ((((Oreochromis sp.,(Tropheus duboisi, Neolamprologus brichardi)), Tylochromis polylepis),((Etroplus maculatus, Paretroplus maculatus),(Ptychochromoides katria, Paratilapia polleni))),(Astronotus ocellatus, Hypselecara temporalis)); and Tree 3: (((((Oreochromis sp.,(Tropheus duboisi, Neolamprologus brichardi)), Tylochromis polylepis), Etroplus maculatus),((Astronotus ocellatus, Hypselecara temporalis),(Ptychochromoides katria, Paratilapia polleni))), Paretroplus maculatus). |
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