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Aspergillus nidulans is a model organism for aspergilli, which are an important …


Biology Articles » Mycology » Metabolic network driven analysis of genome-wide transcription data from Aspergillus nidulans » Additional data files

Additional data files
- Metabolic network driven analysis of genome-wide transcription data from Aspergillus nidulans

The following additional data are available with the online version of this paper. Additional data file 1 illustrates genes whose expression was significantly changed in the pair-wise comparison: glucose versus ethanol. Additional data file 2 illustrates genes whose expression was significantly changed in the pair-wise comparison: glycerol versus ethanol. Additional data file 3 illustrates genes whose expression was significantly changed in the pair-wise comparisons glucose versus glycerol. Additional data file 4 illustrates reporter metabolites and enzymes comprising the 'small' subnetwork identified by comparing expression data on glucose and ethanol. Additional data file 5 illustrates reporter metabolites and enzymes comprising the 'small' subnetwork identified by comparing expression data on glycerol and ethanol. Additional data file 6 illustrates reporter metabolites and enzymes comprising the 'small' subnetwork identified by comparing expression data on glucose and glycerol. Additional data file 7 lists all of the reactions in the metabolic network reconstructed for A. nidulans and gives the abbreviations assigned to the metabolite names. Additional data file 8 lists the normalized intensities for the three biologic replicates on the three carbon sources studied. Additional data file 9 includes complete lists of genes whose expression was significantly changed in the pair-wise comparisons. Additional data file 10 presents the functional classification of the differentially expressed genes based on GO assignments provided by CADRE. Additional data file 11 provides results from the ANOVA test performed, considering normalized transcriptome data from all of the replicated experiments on the different carbon sources. Additional data file 12 lists the genes assigned to each gene cluster. Additional data file 13 presents the 'large' subnetworks for each of the pair-wise comparisons between the three carbon sources investigated. Additional data file 14 presents the functional classification of the genes in each of the 'small' subnetworks, based on GO assignments provided by CADRE.


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