Login

Join for Free!
118820 members
table of contents table of contents

Proteins that act at specific DNA sequences bind DNA randomly and then …


Biology Articles » Biophysics » Molecular Biophysics » Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA » References

References
- Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA

1. Garvie, C. W. & Wolberger, C. (2001) Mol. Cell 8:, 937-946.
2. Stillman, B. (2005) FEBS Lett. 579:, 877-884.
3. Browning, D. F. & Busby, S. J. (2004) Nat. Rev. Microbiol. 2:, 57-65.
4. Roberts, R. J., Vincze, T., Posfai, J. & Macelis, D. (2005) Nucleic Acids Res. 33:, D230-D232.
5. Pingoud, A., Fuxreiter, M., Pingoud, V. & Wende, W. (2005) Cell. Mol. Life Sci. 62:, 685-707.
6. Berg, O. G. & von Hippel, P. H. (1985) Annu. Rev. Biophys. Biophys. Chem. 14:, 131-160.
7. Berg, H. C. (1993) Random Walks in Biology (Princeton Univ. Press, Princeton).
8. Halford, S. E. & Marko, J. F. (2004) Nucleic Acids Res. 32:, 3040-3052.
9. von Hippel, P. H. & Berg, O. G. (1989) J. Biol. Chem. 264:, 675-678.
10. Winter, R. B., Berg, O. G. & von Hippel, P. H. (1981) Biochemistry 20:, 6961-6977.
11. Berg, O. G., Winter, R. B. & von Hippel, P. H. (1981) Biochemistry 20:, 6929-6948.
12. Gerland, U., Moroz, J. D. & Hwa, T. (2002) Proc. Natl. Acad. Sci. USA 99:, 12015-12020.
13. Berg, O.G. (1978) Chem. Phys. 31:, 47-57.
14. Baldwin, G. S., Sessions, R. B., Erskine, S. G. & Halford, S. E. (1999) J. Mol. Biol. 288:, 87-103.
15. Bellomy, G. R. & Record, M. T., Jr. (1990) Prog. Nucleic Acids Res. Mol. Biol. 30:, 81-128.
16. Shimamoto, N. (1999) J. Biol. Chem. 274:, 15293-15296.
17. Jeltsch, A. & Urbanke, C. (2004) in Restriction Endonucleases, Nucleic Acids and Molecular Biology, ed. Pingoud, A. (Springer, Heidelberg, Germany), Vol. 14:, pp. 95-110.
18. Jack, W. E., Terry, B. J. & Modrich, P. (1982) Proc. Natl. Acad. Sci. USA 79:, 4010-4014.
19. Terry, B. J., Jack, W. E. & Modrich, P. (1985) J. Biol. Chem. 260:, 13130-13137.
20. Record, M. T., Jr., Zhang, W. & Anderson, C. F. (1998) Adv. Protein Chem. 51:, 281-353.
21. Harada, Y., Funatsu, T., Murakami, K., Nonoyama, Y., Ishihama, A. & Yanagida, T. (1999) Biophys. J. 76:, 709-715.
22. Guthold, M., Zhu, X., Rivetti, C., Yang, G., Thomson, N. H., Kasas, S., Hansma, H. G., Smith, B., Hansma, P. K. & Bustamante, C. (1999) Biophys. J. 77:, 2284-2294.
23. Sakata-Sogawa, K. & Shimamoto, N. (2004) Proc. Natl. Acad. Sci. USA 101:, 14731-14735.
24. Yildiz, A., Tomishige, M., Vale, R. D. & Selvin, P. R. (2004) Science 303:, 676-678.
25. Stanford, N. P., Szczelkun, M. D., Marko, J. F. & Halford, S. E. (2000) EMBO J. 19:, 6546-6557.
26. Gowers, D. M. & Halford, S. E. (2003) EMBO J. 22:, 1410-1418.
27. Hu, W. Y., Thompson, W., Lawrence, C. E. & Derbyshire, K. M. (2001) J. Mol. Biol. 306:, 403-416.
28. Coppey, M., Bénichou, O., Voituriez, R. & Moreau, M. (2004) Biophys. J. 87:, 1640-1649.
29. Zhou, H.-X. (2005) Biophys. J. 88:, 1608-1615.
30. Heiter, D. F., Lunnen, K. D. & Wilson, G. G. (2005) J. Mol. Biol. 348:, 631-640.
31. Bellamy, S. R., Milsom, S. E., Scott, D. J., Daniels, L. E., Wilson, G. G. & Halford, S. E. (2005) J. Mol. Biol. 348:, 641-653. 
32. Sambrook, J. & Russsell, D. W. (2001) Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Lab. Press, Woodbury, NY).
33. Yanisch-Perron, C., Vieira, J. & Messing, J. (1985) Gene 33:, 103-119.
34. Vipond, I. B. & Halford, S. E. (1995) Biochemistry 34:, 1113-1119.
35. Taylor, J. D., Badcoe, I. G., Clarke, A. R. & Halford, S. E. (1991) Biochemistry 30:, 8743-8753.
36. Martin, A. M., Horton, N. C., Luseti, S., Reich, N. O. & Perona, J. J. (1999) Biochemistry 38:, 8430-8439.
37. Engler, L. E., Sapienza, P., Dorner, L. F., Kucera, R., Schildkraut, I. & Jen-Jacobson, L. (2001) J. Mol. Biol. 307:, 619-636.
38. Bath, A. J., Milsom, S. E., Gormley, N. A. & Halford, S. E. (2002) J. Biol. Chem. 277:, 4024-4033.
39. Richey, B., Cayley, D. S., Mossing, M. C., Kolka, C., Anderson, C. F., Farrar, T. C. & Record, M. T., Jr. (1987) J. Biol. Chem. 262:, 7157-7164.

rating: 0.00 from 0 votes | updated on: 6 Nov 2008 | views: 5177 |

Rate article:







excellent!bad…