Join for Free!
122077 members

table of contents table of contents

Home » Biology Articles » Biochemistry » Carbohydrate Biochemistry » Large-scale approaches for glycobiology » References

- Large-scale approaches for glycobiology

  • Rees DA. Shapely polysaccharides. The eighth Colworth Medal Lecture. Biochem J. 1972;126:257–273.
  • Bertozzi CR, Kiessling LL. Chemical glycobiology. Science. 2001;291:2357–2364. doi: 10.1126/science.1059820.
  • Roseman S. Reflections on glycobiology. J Biol Chem. 2001;276:41527–41542. doi: 10.1074/jbc.R100053200.
  • Stanley P, Raju TS, Bhaumik M. CHO cells provide access to novel N-glycans and developmentally regulated glycosyltransferases. Glycobiology. 1996;6:696–699.
  • Masson E, Troncy L, Ruggiero D, Wiernsperger N, Lagarde M, El Bawab S. a-Series gangliosides mediate the effects of advanced glycation end products on pericyte and mesangial cell proliferation: a common mediator for retinal and renal microangiopathy? Diabetes. 2005;54:220–227. 
  • Buchholz A, Hurlebaus J, Wandrey C, Takors R. Metabolomics: quantification of intracellular metabolic dynamics. Biomol Eng. 2002;19:5–15. doi: 10.1016/S1389-0344(02)00003-5. 
  • KEGG: Kyoto Encyclopedia of Genes and Genomes. http://www.genome.jp/kegg/pathway.html
  • Roth J. Protein N-glycosylation along the secretory pathway: relationship to organelle topography and function, protein quality control, and cell interactions. Chem Rev. 2002;102:285–303. doi: 10.1021/cr000423j.
  • Murrell MP, Yarema KJ, Levchenko A. The systems biology of glycosylation. Chembiochem. 2004;5:1334–1347. doi: 10.1002/cbic.200400143. 
  • Dennis JW, Granovsky M, Warren CE. Protein glycosylation in development and disease. BioEssays. 1999;21:412–421. doi: 10.1002/(SICI)1521-1878(199905)21:5<412::AID-BIES8>3.0.CO;2-5.
  • Kunz H. Emil Fischer - unequalled classicist, master of organic chemistry research, and inspired trailblazer of biological chemistry. Angew Chem Int Ed Engl. 2002;41:4439–4451. doi: 10.1002/1521-3773(20021202)41:23<4439::AID-ANIE4439>3.0.CO;2-6. 
  • Zachara NE, Hart GW. The emerging significance of O-GlcNAc in cellular regulation. Chem Rev. 2002;102:431–438. doi: 10.1021/cr000406u. 
  • Angata T, Varki A. Chemical diversity in the sialic acids and related α-keto acids: an evolutionary perspective. Chem Rev. 2002;102:439–469. doi: 10.1021/cr000407m. 
  • Rudd PM, Endo T, Colominas C, Groth D, Wheeler SF, Harvey DJ, Wormald MR, Serban H, Prusiner SB, Kobata A, Dwek RA. Glycosylation differences between the normal and pathogenic prion protein isoforms. Proc Natl Acad Sci USA. 1999;96:13044–13049. doi: 10.1073/pnas.96.23.13044. 
  • Lawson VA, Collins SJ, Masters CL, Hill AF. Prion protein glycosylation. J Neurochem. 2005;93:793–801. doi: 10.1111/j.1471-4159.2005.03104.x. 
  • Lanza F, Healy L, Sutherland DR. Structural and functional features of the CD34 antigen: an update. J Biol Regul Homeost Agents. 2001;15:1–13. 
  • Zaia J. Mass spectrometry of oligosaccharides. Mass Spectrom Rev. 2004;23:161–227. doi: 10.1002/mas.10073.
  • Sagi D, Kienz P, Denecke J, Marquardt T, Peter-Katalinic J. Glycoproteomics of N-glycosylation by in-gel deglycosylation and matrix-assisted laser desorption/ionisation-time of flight mass spectrometry mapping: application to congenital disorders of glycosylation. Proteomics. 2005;5:2689–2701. doi: 10.1002/pmic.200401312. 
  • Qiu R, Regnier FE. Use of multidimensional lectin affinity chromatography in differential glycoproteomics. Anal Chem. 2005;77:2802–2809. doi: 10.1021/ac048751x. 
  • Pilobello KT, Krishnamoorthy L, Slawek D, Mahal LK. Development of a lectin microarray for the rapid analysis of protein glycopatterns. ChemBioChem. 2005;6:985–989. doi: 10.1002/cbic.200400403.
  • Hirabayashi J. Lectin-based structural glycomics: glycoproteomics and glycan profiling. Glycoconjug J. 2004;21:35–40. doi: 10.1023/B:GLYC.0000043745.18988.a1.
  • Mechref Y, Novotny MV. Structural investigations of glycoconjugates at high sensitivity. Chem Rev. 2002;102:321–369. doi: 10.1021/cr0103017. 
  • Morelle W, Michalski J-C. Glycomics and mass spectrometry. Curr Pharm Des. 2005;11:2615–2645. doi: 10.2174/1381612054546897.
  • Shin I, Park S, Lee M-r. Carbohydrate microarrays: an advanced technology for functional studies of glycans. Chemistry. 2005;11:2894–2901. doi: 10.1002/chem.200401030.
  • Blixt O, Head S, Mondala T, Scanlan C, Huflejt ME, Alvarez R, Bryan MC, Fazio F, Calarese D, Stevens J, et al. Printed covalent glycan array for ligand profiling of diverse glycan binding proteins. Proc Natl Acad Sci USA. 2004;101:17033–17038. doi: 10.1073/pnas.0407902101.
  • Feizi T, Fazio F, Chai W, Wong C-H. Carbohydrate microarrays - a new set of technologies at the frontiers of glycomics. Curr Opin Struct Biol. 2003;13:637–645. doi: 10.1016/j.sbi.2003.09.002.
  • Gabius H-J, Siebert H-C, André S, Jiménez-Barbero J, Rüdiger H. Chemical biology of the sugar code. ChemBioChem. 2004;5:740–764. doi: 10.1002/cbic.200300753.
  • Zhou Q, Park SH, Boucher S, Higgins E, Lee K, Edmunds T. N-Linked oligosaccharide analysis of glycoprotein bands from isoelectric focusing gels. Anal Biochem. 2004;335:10–16. doi: 10.1016/j.ab.2004.07.028.
  • Nishimura S-I, Niikura K, Kurogochi M, Matsushita T, Fumoto M, Hinou H, Kamitani R, Nakagawa H, Deguchi K, Miura N, et al. High-throughput protein glycomics: combined use of chemoselective glycoblotting and MALDI-TOF/TOF mass spectrometry. Angew Chem Int Ed Engl. 2004;44:91–96. doi: 10.1002/anie.200461685.
  • Tonge R, Shaw J, Middleton B, Rowlinson R, Rayner S, Young J, Pognan F, Hawkins E, Currie I, Davison M. Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology. Proteomics. 2001;1:377–396. doi: 10.1002/1615-9861(200103)1:3<377::AID-PROT377>3.3.CO;2-Y.
  • Block TM, Comunale MA, Lowman M, Steel LF, Romano PR, Fimmel C, Tennant BC, London WT, Evans AA, Blumberg BS, et al. Use of targeted glycoproteomics to identify serum glycoproteins that correlate with liver cancer in woodchucks and humans. Proc Natl Acad Sci USA. 2005;102:779–784. doi: 10.1073/pnas.0408928102.
  • Tang H, Mechref Y, Novotny MV. Automated interpretation of MS/MS spectra of oligosaccharides. Bioinformatics. 2005;21(Suppl 1):i431–i439. doi: 10.1093/bioinformatics/bti1038.
  • Borman S. Carbohydrate advances. Chem Eng News. 2005;83:41–50.
  • Peri F, Nicotra F. Chemoselective ligation in glycochemistry. Chem Commun (Camb). 2004;21:623–627. doi: 10.1039/b308907j.
  • Ratner DM, Adams EW, Disney MD, Seeberger PH. Tools for glycomics: Mapping interactions of carbohydrates in biological systems. ChemBioChem. 2004;5:1375–1383. doi: 10.1002/cbic.200400106.
  • Love KR, Seeberger PH. Carbohydrate arrays as tools for glycomics. Angew Chem Int Ed Engl. 2002;41:3583–3586. doi: 10.1002/1521-3773(20021004)41:19<3583::AID-ANIE3583>3.0.CO;2-P. 
  • Niikura K, Kamitani R, Kurogochi M, Uematsu R, Shinohara Y, Nakagawa H, Deguchi K, Monde K, Kondo H, Nishimura S-I. Versatile glycoblotting nanoparticles for high-throughput protein glycomics. Chemistry. 2005;11:3825–3834. doi: 10.1002/chem.200401289.
  • Kayser H, Zeitler R, Kannicht C, Grunow D, Nuck R, Reutter W. Biosynthesis of a nonphysiological sialic acid in different rat organs, using N-propanoyl-D-hexosamines as precursors. J Biol Chem. 1992;267:16934–16938.
  • Han S, Collins BE, Bengtson P, Paulson JC. Homomultimeric complexes of CD22 revealed by in situ photoaffinity proteinglycan crosslinking. Nat Chem Biol. 2005;1:93–97. doi: 10.1038/nchembio713.
  • Kho Y, Kim SC, Jiang C, Barma D, Kwon SW, Cheng J, Jaunbergs J, Weinbaum C, Tamanoi F, Falck J, Zhao Y. A tagging-via-substrate technology for detection and proteomics of farnesylated proteins. Proc Natl Acad Sci USA. 2004;101:12479–12484. doi: 10.1073/pnas.0403413101.
  • Saxon E, Bertozzi CR. Cell surface engineering by a modified Staudinger reaction. Science. 2000;287:2007–2010. doi: 10.1126/science.287.5460.2007.
  • Vocadlo DJ, Hang HC, Kim E-J, Hanover JA, Bertozzi CR. A chemical approach for identifying O-GlcNAc-modified proteins in cells. Proc Natl Acad Sci USA. 2003;100:9116–9121. doi: 10.1073/pnas.1632821100. 
  • Khidekel N, Ficarro SB, Peters EC, Hsieh-Wilson LC. Exploring the O-GlcNAc proteome: direct identification of O-GlcNAc-modified proteins from the brain. Proc Natl Acad Sci USA. 2004;101:13132–13137. doi: 10.1073/pnas.0403471101. 
  • Lundquist JJ, Toone EJ. The cluster glycoside effect. Chem Rev. 2002;102:555–578. doi: 10.1021/cr000418f. 
  • Kiessling LL, Pohl S. Strength in numbers: non-natural polyvalent carbohydrate derivatives. Chem Biol. 1996;3:71–77. doi: 10.1016/S1074-5521(96)90280-X.
  • Hanover JA. Glycan-dependent signaling: O-linked N-acetylglucosamine. FASEB J. 2001;15:1865–1876. doi: 10.1096/fj.01-0094rev.

rating: 1.00 from 2 votes | updated on: 29 Sep 2008 | views: 21240 |

Rate article: