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The genotyping protocols used in this study may be useful for differentiating …


Biology Articles » Parasitology » Genetic diversity of Plasmodium vivax in Kolkata, India » Tables

Tables
- Genetic diversity of Plasmodium vivax in Kolkata, India

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Table 1 Size and RFLP patterns and populations of pvcs alleles (n = 151).
Alleles
Size variation
Pre/Post patterns
n (%)
1. VK247
a
in
1 (0.66)
2. VK210
a
in/in
2 (1.32%)
3. VK210
a
no/in
26 (17.2%)
4. VK210
a
no/no
16 (10.6%)
5. VK210
a+b
no/in
2 (1.32%)
6. VK210
b
in/in
4 (2.64%)
7. VK210
b
no/in
48 (31.7%)
8. VK210
b
no/no
45 (29.8%)
9. VK210
c
in/in
1 (0.66%)
10. VK210
c
no/in
2 (1.32%)
11. VK210
c
no/no
5 (3.3%)

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Table 2Size and RFLP patterns and frequency of pvmsp1 alleles detected (the second fragment) (n = 151).
Alleles
Size variation
Alu1 RFLP patterns
Mnl1 RFLP patterns
n (%)
1
a
a1
m1
20 (13.2%)
2
a
a1
m2
2 (1.32%)
3
a
a2
m1
3 (2.0%)
4
a
a2
m2
17 (11.2%)
5
a
a2
m4
1 (0.66%)
6
a
a2
m5
1
7
a
a3
m1
1
8
a
a3
m6
1
9
a
a4
m1
1
10
a
a4
m2
1
11
a
a4
m4
1
12
a
a5
m4
6 (4.0%)
13
a
a5
m5
1
14
a
a6
m4
2
15
a
a6
m5
13 (8.6%)
16
a
a7
m4
1
17
a
a7
m5
1
18
b
a1
m1
26 (17.3%)
19
b
a1
m2
5 (3.3%)
20
b
a2
m1
1
21
b
a2
m2
7 (4.6%)
22
b
a3
m1
1
23
b
a3
m2
1
24
b
a3
m5
1
25
b
a4
m1
2
26
b
a5
m1
1
27
b
a5
m2
2
28
b
a5
m4
16 (10.3%)
29
b
a6
m1
1
30
b
a6
m2
2
31
b
a6
m4
4 (2.64%)
32
b
a6
m5
2
33
b
a7
m4
1
34
b
a7
m6
4
35
b
a8
m5
1

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Table 3 Size and RFLP patterns and frequency of pvmsp3-alpha alleles detected (n = 151).
Alleles
Size variation
Alu 1 RFLP patterns
Hha1 RFLP patterns
n (%)
1
a
al 1
h1
22 (14.5%)
2
a
al 1
h2
3
3
a
al 1
h3
3
4
a
al 1
h4
5 (3.3%)
5
a
al 2
h1
2
6
a
al 2
h2
4
7
a
al 2
h3
3
8
a
al 2
h4
2
9
a
al 3
h1
8 (5.2%)
10
a
al 3
h2
2
11
a
al 3
h3
13 (8.6%)
12
a
al 3
h4
10 (6.6%)
13
a
al 3
h5
2
14
a
al 4
h1
2
15
a
al 4
h3
5
16
a
al 4
h4
5
17
a
al 4
h5
1
18
a
al 5
h3
8 (5.2%)
19
a
al 5
h4
1
20
a
al 5
h5
1
21
b
al 1
h1
3
22
b
al 1
h2
5
23
b
al 1
h3
1
24
b
al 2
h1
2
25
b
al 2
h2
3
26
b
al 3
h1
1
27
b
al 3
h3
3
28
b
al 4
h4
1
29
c
al 1
h1
11 (7.2%)
30
c
al 1
h2
6 (4.0%)
31
c
al 1
h4
1
32
c
al 2
h2
3
33
c
al 3
h1
1
34
c
al 3
h3
5
35
c
al 3
h5
1
36
c
al 4
h3
1
37
c
al 4
h4
1

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Source: Malaria Journal 2006, 5:71     


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