Peters B, Sidney J, Bourne P, Bui HH, Buus S, Doh G, Fleri W, Kronenberg M, Kubo R, et al. The immune epitope database and analysis resource: from vision to blueprint. PLoS Biol. (2005) 3:e91
Glasner JD, Rusch M, Liss P, Plunkett G. III, Cabot EL, Darling A, Anderson BD, Infield-Harm P, Gilson MC, et al. ASAP: a resource for annotating, curating, comparing, and disseminating genomic data. Nucleic Acids Res. (2006) 34:D41–D45
Brinkley C, Burland V, Keller R, Rose DJ, Boutin AT, Klink SA, Blattner FR, Kaper JB. Nucleotide sequence analysis of the enteropathogenic Escherichia coli adherence factor plasmid pMAR7. Infect. Immun. (2006) 74:5408–5413
Finn RD, Mistry J, Schuster-Bockler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, et al. Pfam: clans, web tools and services. Nucleic Acids Res. (2006) 34:D247–D251
Selengut JD, Haft DH, Davidsen T, Ganapathy A, Gwinn-Giglio M, Nelson WC, Richter AR, White O. TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes. Nucleic Acids Res. (2007) 35:D260–D264
Siguier P, Perochon J, Lestrade L, Mahillon J, Chandler M. ISfinder: the reference centre for bacterial insertion sequences. Nucleic Acids Res. (2006) 34:D32–D36
Adkins JN, Mottaz HM, Norbeck AD, Gustin JK, Rue J, Clauss TR, Purvine SO, Rodland KD, Heffron F, et al. Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions. Mol. Cell Proteomics (2006) 5:1450–1461
Darling AE. Computational analysis of genome evolution. Ph.D. Thesis (2006) University of Wisconsin, Madison 2006.
Darling AE, Mau B, Blattner FR, Perna NT. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res. (2004) 14:1394–1403
Stein LD, Mungall C, Shu S, Caudy M, Mangone M, Day A, Nickerson E, Stajich JE, Harris TW, et al. The generic genome browser: a building block for a model organism system database. Genome Res. (2002) 12:1599–1610
Greene JM, Asaki E, Bian X, Bock C, Castillo S, Chandramouli G, Martell R, Meyer K, Ruppert T, et al. The NCI/CIT microArray database (mAdb) system – bioinformatics for the management and analysis of Affymetrix and spotted gene expression microarrays. In AMIA Annu. Symp. Proc. (2003) 1066.
Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, et al. The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res. (2004) 32:D258–D261
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. (2000) 25:25–29
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