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Biology Articles » Biomathematics » The earliest settlers' antiquity and evolutionary history of Indian populations: evidence from M2 mtDNA lineage » References

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- The earliest settlers' antiquity and evolutionary history of Indian populations: evidence from M2 mtDNA lineage

  1. Forster P, Matsumura S: Enhanced: Did Early Humans Go North or South?

    Science 2005, 308:965-966. 

  2. Mellars P: Going East: New Genetic and Archaeological Perspectives on the Modern Human Colonization of Eurasia.

    Science 2006, 313:796-800. 

  3. Torroni A, Achilli A, Macaulay V, Richards M, Bandelt HJ: Harvesting the fruit of the human mtDNA tree.

    Trends in Genet 2006, 22:339-345.

  4. Macaulay V, Richards M, Hickey E, Vega E, Cruciani F, Guida V, Scozzari R, Bonne-Tamir B, Sykes B, Torroni A: Single, rapid coastal settlement of Asia revealed by analysis of complete mitochondrial genomes.

    Science 2005, 308:1034-1036. 

  5. Kivisild T, Kaldma K, Metspalu M, Parik J, Papiha S, Villems R: The place of the Indian mitochondrial DNA variants in the global network of maternal lineages and the peopling of the Old World. In Genomic diversity: Applications in human population genetics. Edited by: Deka R, Papiha S. Kluwer. New York: Plenum Press; 1999:135-152.

  6. Kivisild T, Rootsi S, Metspalu M, Mastana S, Kaldma K, Parik J, Metspalu E, Adojaan M, Tolk H-V, Stepanov V, Gölge M, Usanga E, Papiha SS, Cinnioglu C, King R, Cavalli-Sforza L, Underhill PA, Villems R: The genetic heritage of the earliest settlers persists both in Indian tribal and caste populations.

    Am J Hum Genet 2003, 72:313-332. 

  7. Sun C, Kong QP, Palanichamy MG, Agrawal S, Bandelt HJ, Yao YG, Khan F, Zhu CL, Chaudhuri TK, Zhang YP: The dazzling array of basal branches in the mtDNA macrohaplogroup M from India as inferred from complete genomes.

    Mol Biol Evol 2006, 23(3):683-690. 

  8. Kong QP, Yao YG, Sun C, Bandelt HJ, Zhu CL, Zhang YP: Phylogeny of east Asian mitochondrial DNA lineages inferred from complete sequences.

    Am J Hum Genet 2003, 73:671-676. 

  9. Thangaraj K, Chaubey G, Singh VK, Vanniarajan A, Thanseem I, Reddy AG, Singh L: In situ origin of deep rooting lineages of mitochondrial Macrohaplogroup 'M' in India.

    BMC Genomics 2006, 7:151-156. 

  10. Kivisild T, Bamshad MJ, Kaldma K, Metspalu M, Metspalu E, Reidla M, Laos S, Parik J, Watkins WS, Dixon ME, Papiha SS, Mastana SS, Mir MR, Ferak V, Villems R: Deep common ancestry of Indian and western-Eurasian mitochondrial DNA lineages.

    Curr Biol 1999, 9(22):1331-1334. 

  11. Metspalu M, Kivisild T, Metspalu E, Parik J, Hudjashov G, Kaldma K, Serk P, Karmin M, Behar DM, Gilbert MT, Endicott P, Mastana S, Papiha SS, Skorecki K, Torroni A, Villems R: Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans.

    BMC Genet 2004, 5:26. 

  12. Rajkumar R, Banerjee J, Hima Bindu G, Trivedi R, Kashyap VK: Phylogeny and antiquity of M macrohaplogroup inferred from complete mt DNA sequence of Indian specific lineages.

    BMC Evol Biol 2005, 5:26. 

  13. Bamshad M, Kivisild T, Watkins WS: Genetic Evidence on the Origins of Indian Caste Populations.

    Genome Res 2001, 11:994-1004. 

  14. Basu A, Mukherjee N, Roy S, Sengupta S, Banerjee S, Chakraborty M, Dey B, Roy M, Roy B, Bhattacharyya NP, Roychoudhury S, Majumder PP: Ethnic India: a genomic view, with special reference to peopling and structure.

    Genome Res 2003, 13:2277-2290. 

  15. Saillard J, Forster P, Lynnerup N, Bandelt HJ, Norby S: mtDNA variation among Greenland Eskimos: the edge of the Beringian expansion.

    Am J Hum Genet 2000, 67:718-726. 

  16. Mishmar D, Ruiz-Pesini E, Golik P, Macaulay V, Clark AG, Hosseini S, Brandon M, Easley K, Chen E, Brown MD, Sukernik RI, Olckers A, Wallace D: Natural selection shaped regional mtDNA variation in humans.

    Proc Natl Acad Sci USA 2003, 100:171-176. 

  17. Kivisild T, Shen P, Wall DP, Do B, Sung R, Davis K, Passarino G, Underhill PA, Scharfe C, Torroni A, Scozzari R, Modiano D, Coppa A, de Knijff P, Feldman M, Cavalli-Sforza LL, Oefner PJ: The Role of Selection in the Evolution of Human Mitochondrial Genomes.

    Genetics 2006, 172:373-387. 

  18. Forster P: Ice Ages and the mitochondrial DNA chronology of human dispersals: a review.

    Phil Trans R Soc Lond 2004, 359:255-264.

  19. Oppenheimer S: The peopling of world. Contable, London; 2003.

  20. Mellars P: Why did modern human populations disperse from Africa ca. 60,000 years ago? A new model.

    Proc Natl Acad Sci USA 2006, 103:9381-9386. 

  21. Quintana-Murci L, Chaix R, Wells RS, Behar DM, Sayar H, Scozzari R, Rengo C, Al-Zahery N, Semino O, Santachiara-Benerecetti AS, Coppa A, Ayub Q, Mohyuddin A, Tyler-Smith C, Qasim Mehdi S, Torroni A, McElreavey K: Where West Meets East: The Complex mtDNA Landscape of the Southwest and Central Asian Corridor.

    Am J Hum Genet 2004, 74(5):827-845. 

  22. Cordaux R, Saha N, Bentley GR, Aunger R, Sirajuddin SM, Stoneking M: Mitochondrial DNA analysis reveals diverse histories of tribal populations from India.

    Eur J Hum Genet 2003, 11:253-264. 

  23. Drummond AJ, Rambaut A, Shapiro B, Pybus OG: Bayesian Coalescent Inference of Past Population Dynamics from Molecular Sequences.

    Mol Biol Evol 2005, 22:1185-1192. 

  24. Greenberg BD, Newbold JE, Sugino A: Intraspecific nucleotide sequence variability surrounding the origin of replication in human mitochondrial DNA.

    Gene 1983, 21:33-49. 

  25. Mix AC, Bard E, Schneider R: Environmental processes of the ice age: land, oceans, glaciers (EPILOG).

    Quaternary Science Reviews 2001, 20:627-657. 

  26. Zonneveld KAF, Gannsen G, Troelstra S, Versteegh GJM, Vischer H: Mechanisms forcing abrupt fluctuations of the Indian Ocean summer monsoon during the last deglaciation.

    Quaternary Science Reviews 1997, 16:187-20.

  27. Fu YX: Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection.

    Genetics 1997, 147:915-925. 

  28. Atkinson QD, Russell DG, Drummond AJ: mtDNA Variation Predicts Population Size in Humans and Reveals a Major Southern Asian Chapter in Human Prehistory.

    Mol Biol Evol 2008, 25(2):468-474.

  29. Cavalli-Sforza LL, Piazza A, Menozzi P: The History and Geography of Human Genes. Princeton, NJ: Princeton University Press; 1994.

  30. Slatkin M, Hudson RR: Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations.

    Genetics 1991, 129:555-562. 

  31. Roychoudhury S, Roy S, Basu A, Banerjee R, Vishwanathan H, Usha Rani MV, Sil SK, Mitra M, Majumder PP: Genomic structures and population histories of linguistically distinct tribal groups of India.

    Hum Genet 2001, 109:339-350. 

  32. Majumder PP: Ethnic populations of India as seen from an evolutionary perspective.

    J Biosci 2001, 26(Suppl 4):533-545. 

  33. Gadgil M, Guha R: This Fissured Land: An Ecological History of India. Oxford University Press, New Delhi and University of California Press, Berkeley; 1992.

  34. Bryson RA, Swain AM: Holocene variations in monsoon rainfall in Rajasthan.

    Quaternary Research 1981, 16:135-145.

  35. Williams MAJ, Clarke MF: Late Quaternary environments in north-central India.

    Nature 1984, 308:633-635.

  36. Agrawal DP, Pande BM: Ecology and Archaeology of Western India. Concept Publishing, Delhi; 1977. 

  37. Megaw JVS: Hunters, gatherers and first farmers beyond Europe: An archaeological survey. Leicester University Press, Leicester; 1977. 

  38. Vishnu-Mittre : India: local and introduced crops. In The Early History of Agriculture. Edited by: Hutchinson J, Clark G, Jope EM, Riley R. Oxford: Oxford university press; 1977:129-147.

  39. Jarrige JF, Lechevallier M: Excavations at Mehrgarh, Baluchistan. In South Asian Archaeology. Edited by: Taddei M. Instituto Universitario Orientale: Naples; 1977:463-535.

  40. Dani AH: Timargarh and Gandhara Grave Culture.

    Ancient Pakistan 1967, 3:1-407.

  41. Vishnu-Mittre : Forty years of archaeobotanical research in South-Asia.

    Man and Environment 1989, 14:1-16.

  42. Gadgil M, Joshi NV, Shambu Prasad UV, Manoharan S, Suresh Patil: Peopling of India. In The Indian Human Heritage. Edited by: Balasubramanian D, Appaji NR. Hyderabad: Universities Press; India; 1997:100-129.

  43. Misra VN: Prehistoric human colonization of India.

    J Biosci 2001, 26(4):491-531. 

  44. Sankalia HD: Prehistory and Protohistory in India and Pakistan. Bombay: Bombay University Press; 1963.

  45. Brice WC: The environmental history of the Near and Middle East since the last Ice Age. London: Academic Press; 1978.

  46. Rao NMS, Malhotra KC: The stone age hill dwellers of Tekkalakota : preliminary report of the excavations at Tekkalakota. Deccan College: India; 1965. 

  47. Cordaux R, Deepa R, Vishwanathan H, Stoneking M: Genetic Evidence for the Demic Diffusion of Agriculture to India.

    Science 2004, 304:1125. 

  48. Gyaneshwer C, Metspalu M, Kivisild T, Richard Villems: Peopling of South Asia: investigating the caste-tribe continuum in India.

    BioEssays 2006, 29:91-100. 

  49. Su B, Xiao C, Deka R, Seielstad MT, Kangwanpong D, Xiao J, Lu D, Underhill P, Cavalli-Sforza L, Chakraborty R, Jin L: Y chromosome haplotypes reveal prehistorical migrations to the Himalayas.

    Hum Genet 2000, 107:582-590.

  50. Matisoff JA: Sino-Tibetan linguistics: present state and futureprospects.

    Annu Rev Anthropol 1991, 20:469-504.

  51. Census of India 2001: Data of Scheduled Castes and Scheduled Tribes: based on 2001 census in digital format. Office of the Registrar General, India. Government of India; 2001.

  52. Thapar R: A history of India. Volume 1. Middlesex: Penguin; 1966.

  53. Ray N: Nationalism in India. Aligarh: Aligarh Muslim University; 1973.

  54. Singh KS: People of India: An introduction. Anthropological Survey of India; 1992.

  55. Kosambi DD: The culture and civilisation of ancient India in historical outline. New Delhi: Vikas Publishing House; 1991.

  56. Sambrook J, Fritsch E, Maniatis T: Molecular Cloning: A Laboratory Manual. New York: Cold Spring Harbor Laboratory; 1989. 

  57. Rieder MJ, Taylor SL, Tobe VO, Nickerson DA: Automating the identification of DNA variations using quality-based fluorescence re-sequencing: analysis of the human mitochondrial genome.

    Nucleic Acids Res 1998, 26:967-973.

  58. Andrews RM, Kubacka I, Chinnery PF, Lightowlers RN, Turnbull DM, Howell N: Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA.

    Nat Genet 1999, 23:147.

  59. Bandelt H-J, Forster P, Rohl A: Median-joining networks for inferring intraspecific phylogenies.

    Mol Biol Evol 1999, 16:37-48. 

  60. Excoffier L, Smouse P, Quattro J: Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data.

    Genetics 1992, 131(2):479-491. 

  61. Excoffier LG, Laval , Schneider S: Arlequin ver. 3.0: An integrated software package for population genetics data analysis.

    Evol Bioinform Online 2005, 1:47-50.

  62. Wakeley J: The effects of subdivision on the genetic divergence of populations and species.

    Evolution 2000, 54(4):1092-1101. 

  63. Metropolis N, Rosenbluth AW, Rosenbluth MN, Teller AH, Teller E: Equations of state calculations by fast computing machines.

    J Chem Phy 1953, 21:1087-1091. 

  64. Drummond AJ, Rambaut A: BEAST: Bayesian evolutionary analysis by sampling trees.

    BMC Evol Biol 2007, 7:214. 

  65. Rambaut A, Drummond AJ: Tracer. 1.3rd edition. Oxford: University of Oxford; 2007.


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