Login

Join for Free!
61249 members
table of contents table of contents

Although a huge amount of mammalian genomic data does become publicly available, …


');

Biology Articles » Bioinformatics » Construction of an open-access database that integrates cross-reference information from the transcriptome and proteome of immune cells » References

References
- Construction of an open-access database that integrates cross-reference information from the transcriptome and proteome of immune cells

Abbas AR, et al. Immune response in silico (IRIS): immune-specific genes identified from a compendium of microarray expression data. Genes Immun., ( (2005) ) 6, : 319–331.

Altschul SF, et al. Basic local alignment search tool. J. Mol. Biol., ( (1990) ) 215, : 403–410.

Benson DA, et al. GenBank. Nucleic Acids Res., ( (2007) ) 35, : D21–D25.

Cutler P. Protein arrays: the current state-of-the-art. Proteomics, ( (2003) ) 3, : 3–18.

Dai M, et al. Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data. Nucleic Acids Res., ( (2005) ) 33, : e175.

Eddy SR. Profile hidden Markov models. Bioinformatics, ( (1998) ) 14, : 755–763.

Fievet J, et al. Assessing factors for reliable quantitative proteomics based on two-dimensional gel electrophoresis. Proteomics, ( (2004) ) 4, : 1939–1949.

Gustafsson JS, et al. Statistical exploration of variation in quantitative two-dimensional gel electrophoresis data. Proteomics, ( (2004) ) 4, : 3791–3799.

Harbig J, et al. A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array. Nucleic Acids Res., ( (2005) ) 33, : e31.

Hubbell E, et al. Robust estimators for expression analysis. Bioinformatics, ( (2002) ) 18, : 1582–1592..

Irizarry RA, et al. Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res., ( (2003) ) 31, : e15.

Kersey PJ, et al. The international protein index: an integrated database for proteomics experiments. Proteomics, ( (2004) ) 4, : 1985–1988.

Kimura Y, et al. Construction of quantitative proteome reference maps of mouse spleen and lymph node based on two-dimensional gel electrophoresis. Proteomics, ( (2006) ) 6, : 3833–3844.

Komor M, et al. Transcriptional profiling of human hematopoiesis during in vitro lineage-specific differentiation. Stem Cells, ( (2005) ) 23, : 1154–1169.

Kwong KY, et al. Synchronous global assessment of gene and protein expression in colorectal cancer progression. Genomics, ( (2005) ) 86, : 142–158.

Maglott D, et al. Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res., ( (2007) ) 35, : D26–D33.

Mahon P, et al. Quantitative and reproducible two-dimensional gel analysis using Phoretix 2D Full. Electrophoresis, ( (2001) ) 22, : 2075–2085.

Pruitt KD, et al. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res., ( (2007) ) 35, : D5–D12.

Rautajoki K, et al. Proteome characterization of human T helper 1 and 2 cells. Proteomics, ( (2004) ) 4, : 84–92.

Schuler GD. Pieces of the puzzle: expressed sequence tags and the catalog of human genes. J. Mol. Med., ( (1997) ) 75, : 694–698.

Smalheiser NR. Informatics and hypothesis-driven research. EMBO rep., ( (2002) ) 3, : 702.

Su AI, et al. A gene atlas of the mouse and human protein-encoding transcriptomes. Proc. Natl Acad. Sci. USA, ( (2004) ) 101, : 6062–6067.

Zhang J, et al. Detecting false expression signals in high-density oligonucleotide arrays by an in silico approach. Genomics, ( (2005) ) 85, : 297–308.

Zheng C, et al. Gene expression profiling of CD34+ cells identifies a molecular signature of chronic myeloid leukemia blast crisis. Leukemia, ( (2006) ) 20, : 1028–1034.


rating: 2.00 from 1 votes | updated on: 28 Oct 2008 | views: 7912 |

Rate article:







excellent!bad…