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The recent access to the overwhelming amount genomic data of cyanobacteria has …

Biology Articles » Biochemistry » Carotenoid Biosynthesis in Cyanobacteria: Structural and Evolutionary Scenarios Based on Comparative Genomics » Tables

Tables
- Carotenoid Biosynthesis in Cyanobacteria: Structural and Evolutionary Scenarios Based on Comparative Genomics

Table 1

Putative lycopene cylase and gene number of cyanobacteria in which lacking homolog of crtL.

Species Query sequence for BLASTP All3524 from Anabaena sp.7120/ CT0456 from C. tepidum
ORF Identity (%) E value
Anabaena sp. PCC 7120 Alr3524 Alr0920 Query/35 31/28 Query/ 5-67 1e-57/4e-37
A. variabilis ATCC 29413 Ava3214 Ava4521 94/38 31/27 0/2e-66 1e-56/5e-36
N. punctiforme PCC 73102 NpR4002 NpR4207 79/38 31/30 0/1e-65 7e-54/3e-42
T. erythraeum IMS 101 Or4079 Or2980 61/35 34/30 0/5e-65 5e-59/6e-46
C.watsonii WH8501 Or6211 Or1341 64/34 34/30 0/9e-66 5e-59/4e-43
Synechocystis sp.PCC 6803 Sll0147 Sll0659 62/34 32/31 0/5e-65 2e-67/1e-44
G. violaceus PCC 7421 Gll3598 Gll2484 55/34 33/30 0/5e-64 1e-54/9e-42
Thermosynechococcus elongatus Tlr1139 60/34 0/2e-66
Synechococcus sp. PCC 6301 Syn0876_d 33/28 2e-58/2e-38
Synechococcus sp. PCC 7942 Syn_PCC79420625 33/38 2e-58/2e-38

Note: Database searches were carried out with the BLAST program. The value before virgule is the subject with Alr3524 as the query sequence; the value behind virgule is the subject with CT0456.

Table 2

Conserved motifs in crtW-type ketolase.

Name H-box1 H-box2 H-box3
Ana29413W1 TAHDAMH KHXLHH CYHFGYHXEHH
Ana7120-W TAHDAMH KHXLHH CYHFGYHXEHH
Ana29413-W2 TAHDAMH KHXLHH CYHFGYHXEHH
Nos73102W1 TSHDAMH KHXLHH CYHFGYHXEHH
Nos73102W2 TAHDAMH NHXLHH CYHFGYHXEHH
Glo7421-w TAHDAMH KHXLHH CYHFGYHXEHH
Syn8102-w VAHDAMH NHXRHH CYNFGYHXEHH
Syn9902-w VAHDAMH NHXLHH CYHFGYHXEHH
Table 3

The gene IDs of putative othologous genes for Fig.2.

Species Gene product
crtE crtB CrtP crtI crtQ crtL cruA crtW crtO crtR
Anabaena sp. 7120 4211070 4227390 4227380 4237060 4265750(a) 4233000 4244510 4241130 4246730 4249390
Nostoc punctiforme ATCC 29133 402037140 402026830 402026840 402003840 402039490 402047580 402059010 402036890 402001100 402042230
Trichodesmium erythraeum IMS101 403261180 403262620 403262610 403225420 403263060 403259560 403223080
Gloeobacter violaceus PCC 7421 4779990 4793460 4795260 4812220 4793300 4779770
Crocosphaera watsonii WH8501 400849100 400840970 400840960 400864170 400880630 400887960 400880820
Synechocystis sp. PCC 6803 4274680 4286390 4286380 4287260 4291990 4293600 4299880 4282550
Thermosynechococcus BP-1 4667100 4682740 4682750 4670320 4678460 4686180
Synechococcus sp. WH 8102 5175220 5190760 5190770 5190320 5175080 5181560 5170660
Synechococcus sp. PCC6301 610215650 610229570 610229580 610233440 610228750 610216840 610225020
Synechococcus sp. 7942 403097570 403109760 403109750 403105020 403110550 403096300 403114410
Synechococcus sp. CC9902 403151250 403146750 403146740 403147120 403151100 403153610 403164780

 


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