Login

Join for Free!
116861 members
table of contents table of contents

Combined with complete genomic sequences, these data will vastly improve understanding of …


Biology Articles » Botany » Plant Taxonomy » Ancient flowering plants: DNA sequences and angiosperm classification » References

References
- Ancient flowering plants: DNA sequences and angiosperm classification

  1. Savolainen V, Fay MF, Albach DC, Backlund A, van der Bank M, Cameron KM, Johnson SA, Lledo MD, Pintaud J-C, Powell M, et al.: Phylogeny of the eudicots: a nearly complete familial analysis based on rbcL gene sequences.

    Kew Bull 2000, 55:257-309.

  2. Soltis PS, Soltis DE, Chase MW: Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology.

    Nature 1999, 402:402-404. 

  3. Soltis DE, Soltis PS, Chase MW, Mort ME, Albach DC, Zanis M, Savolainen V, Hahn WH, Hoot SB, Fay MF, et al.: Angiosperm phylogeny inferred from a combined data set of 18S rDNA, rbcL, and atpB sequences.

    Bot J Linn Soc 2000, 133:381-461. |

  4. Chase MW, Soltis DE, Olmstead RG, Morgan D, Les DH, Mishler BD, Duvall MR, Price RA, Hills HG, Qiu Y-L, et al.: Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL.

    Ann Missouri Bot Gard 1993, 80:528-580.

  5. Pryer KM, Schneider H, Smith AM, Cranfill R, Wolf PG, Hunt JS, Sipes SD: Horsetails and ferns are a monophyletic group and the closest living relatives to the seed plants.

    Nature 2001, 409:618-622. 

  6. Soltis DE, Soltis PS, Mort ME, Chase MW, Savolainen V, Hoot SB, Morton CM: Inferring complex phylogenies using parsimony: an empirical approach using three large DNA data sets for angiosperms.

    Syst Biol 1998, 47:32-42. 

  7. Chase MW, Cox AV: Gene sequences, collaboration, and analysis of large data sets.

    Austr Syst Bot 1998, 11:215-229.

  8. Felsenstein J: The number of evolutionary trees.

    Syst Zool 1978, 27:27-33.

  9. Graur D, Duret L, Gouy M: Phylogenetic position of the order Lagomorpha (rabbits, hares and allies).

    Nature 1996, 379:333-335. 

  10. Soltis DE, Soltis PS, Nickrent DL, Johnson LA, Hahn WJ, Hoot SB, Sweere JA, Kuzoff RK, Kron KA, Chase MW: Angiosperm phylogeny inferred from 18S ribosomal DNA sequences.

    Ann Missouri Bot Gard 1997, 84:1-49.

  11. Hillis DM: Taxonomic sampling, phylogenetic accuracy, and investigator bias.

    Syst Biol 1998, 47:3-8. 

  12. Graybeal A: Is it better to add taxa or characters to a difficult phylogenetic problem?

    Syst Biol 1998, 47:9-17.

  13. Kei T, Nei M: Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used.

    Mol Biol Evol 2000, 17:1251-1258. 

  14. Savolainen V, Chase MW, Morton CM, Hoot SB, Soltis DE, Bayer C, Fay MF, de Bruijn A, Sullivan S, Qiu Y-L: Phylogenetics of flowering plants based upon a combined analysis of plastid atpB and rbcL gene sequences.

    Syst Biol 2000, 49:306-362.

  15. Farris JS, Albert VA, Kallersjo M, Lipscomb D, Kluge AG: Parsimony jackknifing outperforms neighbor-joining.

    Cladistics 1996, 12:99-124. | 

  16. Felsenstein J: Confidence limits on phylogenies: an approach using the bootstrap.

    Evolution 1985, 39:783-791.

  17. Qiu Y-L, Lee J, Bernasconi-Quadroni F, Soltis DE, Soltis PS, Zanis M, Chen Z, Savolainen V, Chase MW: The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes.

    Nature 1999, 402:404-407. 

  18. Barkman TJ, Chenery G, McNeal JR, Lyons-Weiler J, Ellisens WJ, Moore M, Wolfe AD, dePamphilis CW: Independent and combined analyses of sequences from all three genome compartments converge on the root of flowering plant phylogeny.

    Proc Nat Acad Sci USA 2000, 97:13166-13171. 

  19. Mathews S, Donoghue MJ: The root of angiosperm phylogeny inferred from duplicate phytochrome genes.

    Science 1999, 286:947-950. 

  20. Cronquist A:

    An Integrated System of Classification of Flowering Plants. New York: Columbia University Press; 1981.

  21. Nandi OI, Chase MW, Endress PK: A combined cladistic analysis of angiosperms using rbcL and non-molecular data sets.

    Ann Missouri Bot Gard 1998, 85:137-212.

  22. Angiosperm Phylogeny Group: An ordinal classification of the families of flowering plants.

    Ann Missouri Bot Gard 1998, 85:531-553.

  23. Chase MW, Fay MF, Savolainen V: Higher-level classification in the angiosperms: new insights from the perspective of DNA sequence data.

    Taxon 2000, 49:685-704.

  24. Doyle JA, Donoghue MJ: Seed plant phylogeny and the origin of the angiosperms: an experimental cladistic approach.

    Bot Rev 1986, 52:321-431. 


rating: 4.00 from 2 votes | updated on: 4 Feb 2009 | views: 5314 |

Rate article:







excellent!bad…