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Human cerebral cortex, human cerebellum, and chimpanzee cortex each undergo different patterns …


Biology Articles » Zoology » Primatology » Aging and Gene Expression in the Primate Brain » References

References
- Aging and Gene Expression in the Primate Brain

  1. Pearl R (1928) The rate of living London: University of London Press. 185 p.
  2. Harman D (1956) Aging: A theory based on free radical and radiation chemistry. J. Gerontol 2:298–300.
  3. Beckman KB, Ames BN (1998) The free radical theory of aging matures. Physiol Rev 78:547–581. 
  4. Hekimi S, Guarente L (2003) Genetics and the specificity of the aging process. Science 299:1351–1354. 
  5. Hughes KA, Reynolds RM (2005) Evolutionary and mechanistic theories of aging. Annu Rev Entomol 50:421–445.
  6. Stadtman ER (2001) Protein oxidation in aging and age-related diseases. Ann N Y Acad Sci 928:22–38. 
  7. Lu T, Pan Y, Kao SY, Li C, Kohane I (2004) Gene regulation and DNA damage in the ageing human brain. Nature 429:883–891. 
  8. Ghosh R, Mitchell DL (1999) Effect of oxidative DNA damage in promoter elements on transcription factor binding. Nucleic Acids Res 27:3213–3218.
  9. Marietta C, Gulam H, Brooks PJ (2002) A single 8,5′-cyclo-2′-deoxyadenosine lesion in a TATA box prevents binding of the TATA binding protein and strongly reduces transcription in vivo. DNA Repair 1:967–975. 
  10. Brooks PJ, Wise DS, Berry DA, Kosmoski JV, Smerdon MJ (2000) The oxidative DNA lesion 8,5′-(S)-cyclo-2′-deoxyadenosine is repaired by the nucleotide excision repair pathway and blocks gene expression in mammalian cells. J Biol Chem 275:22355–22362.
  11. Corral-Debrinski M, Horton T, Lott MT, Shoffner JM, Beal MF (1992) Mitochondrial DNA deletions in human brain: Regional variability and increase with advanced age. Nat Genet 2:324–329.
  12. Mecocci P, MacGarvey U, Kaufman AE, Koontz D, Shoffner JM (1993) Oxidative damage to mitochondrial DNA shows marked age-dependent increases in human brain. Ann Neurol 34:609–616.
  13. Rose MR (1991) The evolutionary biology of aging Oxford (United Kingdom): Oxford University Press. 240 p.
  14. McCarroll SA, Murphy CT, Pletcher SD, Chin CS, Jan YN (2004) Comparing genomic expression patterns across species identified shared transcriptional profile in aging. Nat Genet 36:197–204. 
  15. Welle S, Brooks A, Thornton CA (2001) Senescence-related changes in gene expression in muscle: Similarities and differences between mice and men. Physiol Genomics 5:67–73.
  16. Enard W, Khaitovich P, Klose J, Zollner S, Heissig F (2002) Intra- and interspecific variation in primate gene expression patterns. Science 296:340–343.
  17. Dorus S, Vallender EJ, Evans PD, Anderson JR, Gilbert SL (2004) Accelerated evolution of nervous system genes in the origin of Homo sapiens. Cell 199:1027–1040. 
  18. Emerit J, Edeas M, Bricaire F (2003) Neurodegenerative diseases and oxidative stress. Biomed Pharmacother 58:39–46.
  19. Khaitovich P, Muetzel B, She X, Lachmann M, Hellmann I (2004) Regional patterns of gene expression in human and chimpanzee brains. Genome Res 14:1462–1473. 
  20. Evans SJ, Choudary PV, Vawter MP, Li J, Meador-Woodruff JH (2003) DNA microarray analysis of functionally discrete human brain regions reveals divergent transcriptional profiles. Neurobiol Dis 14:240–250.
  21. Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: A practical and powerful approach to multiple testing. J R Stat Soc Ser B 57:289–300.
  22. Uddin M, Wildman DE, Liu G, Xu W, Johnson RM (2004) Sister grouping of chimpanzees and humans as revealed by genome-wide phylogenetic analysis of brain gene expression profiles. Proc Natl Acad Sci U S A 101:2957–2962.
  23. Caceres M, Lachuer J, Zapala MA, Redmond JC, Kudo L (2003) Elevated gene expression levels distinguish human from non-human primate brains. Proc Natl Acad Sci U S A 100:13030–13035.
  24. Sakaki Y, Watanabe H, Taylor T, Hattori M, Fujiyama A (2003) Human versus chimpanzee chromosome-wide sequence comparison and its evolutionary implication. Cold Spring Harb Symp Quant Biol 68:455–460. 
  25. Sakamoto S, Ishii K (1999) Low cerebral glucose extraction rates in the human medial temporal cortex and cerebellum. J Neurol Sci 172:41–48.
  26. Bentourkia M, Bol A, Ivanoiu A, Labar D, Sibomana M (2000) Comparison of regional cerebral blood flow and glucose metabolism in the normal brain: Effect of aging. J Neurol Sci 181:19–28.
  27. Noda A, Ohba H, Kakiuchi T, Futatsubashi M, Tsukada H (2002) Age-related changes in cerebral blood flow and glucose metabolism in conscious rhesus monkeys. Brain Res 936:76–81.
  28. Evans MD, Cooke MS (2004) Factors contributing to the outcome of oxidative damage to nucleic acids. Bioessays 26:533–542.
  29. Enard W, Fassbender A, Model F, Adorjan P, Pääbo S (2004) Differences in DNA methylation patterns between humans and chimpanzees. Curr Biol 14:R148–R149.
  30. Ptak SE, Hinds DA, Koehler K, Nickel B, Patil N (2005) Fine-scale recombination patterns differ between chimpanzees and humans. Nat Genet 37:429–434. 
  31. Winckler W, Myers SR, Richter DJ, Onofrio RC, McDonald GJ (2005) Comparison of fine-scale recombination rates in humans and chimpanzees. Science 308:107–111.
  32. Lee CK, Weindruch R, Prolla TA (2000) Gene-expression profile of the ageing brain in mice. Nat Genet 25:294–297.
  33. Rodwell GE, Sonu R, Zahn JM, Lund J, Wilhelmy J (2004) A transcriptional profile of aging in the human kidney. PLoS Biology 2:e427.
  34. Li JZ, Vawter MP, Walsh DM, Tomita H, Evans SJ (2004) Systematic changes in gene expression in postmortem human brains associated with tissue pH and terminal medical conditions. Hum Mol Genet 13:609–616.
  35. Tomita H, Vawter MP, Walsh DM, Evans SJ, Choudary PV (2004) Effect of agonal and postmortem factors on gene expression profile: Quality control in microarray analyses of postmortem human brain. Biol Psychiatry 55:346–352.
  36. Bolstad BM, Irizarry RA, Astrand M, Speed TP (2003) A comparison of normalization methods for high density oligonucleotide array data based on bias and variance. Bioinformatics 19:185–193.

 


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